New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 277706NA (NA)6 (0.070) 5/164 NT NA noncoding (32/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 277737 NA (NA)noncoding (63/67 nt) REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 144 total aligned reads displayed.

CCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGAT  >  NC_000913/277607‑277805
                                                                                                   |                                                                                                   
  aCGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgc                                                                                                   <  2:2069796‑M1/100‑3 (MQ=255)
  aCGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgc                                                                                                   >  1:631241‑M1/1‑98 (MQ=255)
        gCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATg                                                                                             <  1:2204903/100‑1 (MQ=255)
          ggATATCGCGGTGTGAAAGGCGCGAAGCTGAGGGTTTATCGGGTGTACAGCGTTTATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggc                                                                                           <  2:1026276/100‑1 (MQ=37)
          ggATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggc                                                                                           <  2:805241/100‑1 (MQ=255)
          ggATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggc                                                                                           >  2:1506074/1‑100 (MQ=255)
            atatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcgg                                                                                         <  1:276697/100‑1 (MQ=255)
            atatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcgg                                                                                         <  1:1796332/100‑1 (MQ=255)
            atatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcgg                                                                                         <  1:389422/100‑1 (MQ=255)
             tatCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATggcggc                                                                                        <  2:326387/100‑1 (MQ=255)
              atCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGca                                                                                       <  1:2739288/100‑1 (MQ=255)
                cgccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGcaca                                                                                     <  1:2479755/100‑1 (MQ=255)
                cgccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGcaca                                                                                     <  2:41321/100‑1 (MQ=255)
                cgccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGcaca                                                                                     >  2:2399615/1‑100 (MQ=255)
                  ccgcGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAg                                                                                   <  1:1452561/100‑1 (MQ=255)
                   cgcgTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAgc                                                                                  <  2:118765/100‑1 (MQ=255)
                    gcgTTAAAAGCGGGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAgcg                                                                                 >  1:1812947/1‑100 (MQ=255)
                      gTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGcc                                                                               >  1:2061054/1‑100 (MQ=255)
                      gTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGcc                                                                               <  1:1913841/100‑1 (MQ=255)
                          aaaGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTAT                                                                           <  2:1010624‑M2/100‑1 (MQ=255)
                           aaGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATC                                                                          <  2:684049‑M2/100‑1 (MQ=255)
                           aaGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATC                                                                          >  1:2380736‑M2/1‑100 (MQ=255)
                              cgcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGG                                                                       <  1:61729‑M2/100‑1 (MQ=255)
                               gcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGC                                                                      >  2:61729‑M2/1‑100 (MQ=255)
                               gcgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGC                                                                      >  1:149555‑M2/1‑100 (MQ=255)
                               gcgAAGCTGAGGGTTTATCGGGCCGACATCCTTCATTGTAGGCCTGATAAGGGCCGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATC                                                                          >  2:1572737‑M2/1‑96 (MQ=255)
                               gagaaGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGC                                                                      <  1:1858023‑M2/98‑1 (MQ=255)
                                cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATTGCGGCACAAGCGCCTTATCCGGcc                                                                     <  2:2536868/100‑1 (MQ=255)
                                cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                     >  1:1243928/1‑100 (MQ=255)
                                cgAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGcc                                                                     <  2:2084716/100‑1 (MQ=255)
                                 gAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCt                                                                    <  1:1000484/100‑1 (MQ=255)
                                 gAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCt                                                                    <  1:2147932/100‑1 (MQ=255)
                                  aaGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTa                                                                   <  1:2605270/100‑1 (MQ=255)
                                   aGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatg                                                                  <  1:1366201‑M1/100‑36 (MQ=255)
                                   aGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTAc                                                                  <  2:1562029/100‑1 (MQ=255)
                                   aGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTAc                                                                  <  2:2433898/100‑1 (MQ=255)
                                    gCTGAGGGTTTATGGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatg                                                                  <  2:667681‑M1/99‑36 (MQ=255)
                                     cTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatgcc                                                                <  1:1722772‑M1/100‑38 (MQ=255)
                                        aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTgccggataaggcgcttgtgccgccatccggcaatgcctga                                                             <  1:642663‑M1/100‑41 (MQ=255)
                                        aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                                             <  1:1582074/100‑1 (MQ=255)
                                        aGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAc                                                             <  1:33139/100‑1 (MQ=255)
                                         gggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAcc                                                            <  2:2659163/100‑1 (MQ=255)
                                         gggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAAcc                                                            <  1:300431/100‑1 (MQ=255)
                                          ggTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACca                                                           >  1:1312138/1‑100 (MQ=255)
                                           gTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcac                                                          >  1:2660525/1‑100 (MQ=255)
                                           ccgatctgggTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcac                                                          <  1:1918415/93‑1 (MQ=255)
                                             ttATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACaa                                                        >  1:467672/1‑100 (MQ=255)
                                               aTCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACaaaa                                                      <  2:126825/100‑1 (MQ=255)
                                                tCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAAc                                                     <  1:1400524/100‑1 (MQ=255)
                                                  gggTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACcacagatcgg                                                   >  2:1918406/1‑94 (MQ=255)
                                                   ggTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGtt                                                  <  2:2376002/100‑1 (MQ=255)
                                                     tCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTAt                                                >  1:193123/1‑100 (MQ=255)
                                                     tCTACATCGTTCATTGTAGCCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATCGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTAt                                                >  2:905663/1‑100 (MQ=255)
                                                      cTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATg                                               <  1:2216655/100‑1 (MQ=255)
                                                       tACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGc                                              >  1:117182/1‑100 (MQ=255)
                                                       tACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGc                                              <  1:700086/100‑1 (MQ=255)
                                                        aCATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGcc                                             <  1:2530376/100‑1 (MQ=255)
                                                        aCATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGACACAAGCGCCTTATCCGGCCTACAAACCCACAAACCGTTATGcc                                             >  2:1321711/1‑100 (MQ=255)
                                                         cATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCg                                            <  1:2378490/100‑1 (MQ=255)
                                                          aTCGTTCATTGTAGGAATGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGGTATGCCGc                                           >  2:506501/1‑100 (MQ=255)
                                                           tCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCa                                          <  1:1367281/100‑1 (MQ=255)
                                                            cGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGTCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCAt                                         >  2:2601056/1‑100 (MQ=255)
                                                             gTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATc                                        >  2:1831073/1‑100 (MQ=255)
                                                             gTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATc                                        >  1:970086/1‑100 (MQ=255)
                                                             gTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATc                                        >  2:703058/1‑100 (MQ=255)
                                                             gTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATc                                        >  1:1228040/1‑100 (MQ=255)
                                                             gTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCCGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCAt                                         >  1:2624796/1‑99 (MQ=255)
                                                                 aTTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGcc                                    <  1:393081/100‑1 (MQ=255)
                                                                   tGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAg                                  >  2:786047/1‑100 (MQ=255)
                                                                   tGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAg                                  <  1:181632/100‑1 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              <  1:2260965/100‑1 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              >  1:1589811/1‑100 (MQ=255)
                                                                       ggCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaaca                              >  2:284961/1‑100 (MQ=255)
                                                                         ccTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaa                            >  2:587437/1‑100 (MQ=255)
                                                                          cTGATAAGCTCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaac                           <  1:1010628/100‑1 (MQ=255)
                                                                          cTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaac                           <  2:467671/100‑1 (MQ=255)
                                                                           tGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGaacaaaca                          >  1:1345059/1‑100 (MQ=255)
                                                                             aTAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACAt                         >  2:1101816/1‑99 (MQ=255)
                                                                             aTAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATg                        <  1:1178271/100‑1 (MQ=255)
                                                                              tAAGCTCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTCATCCGGCCTCCAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGc                       <  2:915516/100‑1 (MQ=255)
                                                                                agcgcagcgcATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCg                     >  2:2196741/1‑100 (MQ=255)
                                                                                agcgcagcgcATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCg                     <  2:2742339/100‑1 (MQ=255)
                                                                                       cgcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggat              <  2:54943/100‑1 (MQ=255)
                                                                                        gcaTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatg             >  1:1723087/1‑100 (MQ=255)
                                                                                         caTCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatgg            <  1:550670/100‑1 (MQ=255)
                                                                                           tCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccct          <  1:642663‑M2/100‑61 (MQ=255)
                                                                                           tCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACggatggat          <  1:2500427/100‑1 (MQ=255)
                                                                                            cAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGAtt         <  1:2081333/100‑1 (MQ=255)
                                                                                            cAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGAtt         <  2:16623/100‑1 (MQ=255)
                                                                                              ggCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcag       <  1:1722772‑M2/100‑64 (MQ=255)
                                                                                                cATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCaa     >  2:1848650/1‑100 (MQ=255)
                                                                                                 aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagctt    <  2:1015635‑M2/100‑67 (MQ=255)
                                                                                                 aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAg    <  1:275915/100‑1 (MQ=255)
                                                                                                 aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAg    <  1:1021850/100‑1 (MQ=255)
                                                                                                 aTTGCCGGATGGCGGCACAAGCGCCTTATCCGGCATACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCaa     <  1:399487/99‑1 (MQ=255)
                                                                                                  ttGCCGGATGGCGGCACAAGCGCCTTATCCGGCaatgcctgatgcgctgcgcttatcaggcctacaatgaacgatgtagacccgataaaccctcagcttc   <  1:1765314‑M2/100‑68 (MQ=255)
                                                                                                   tGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGat  >  1:2140563/1‑100 (MQ=255)
                                                                                                   tGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGat  <  1:382614/100‑1 (MQ=255)
                                                                                                   tGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGat  <  1:1845791/100‑1 (MQ=255)
                                                                                                   tGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGat  <  1:382658/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CCACGCCTGCGGATATCGCCGCGTTAAAAGCGCGAAGCTGAGGGTTTATCGGGTCTACATCGTTCATTGTAGGCCTGATAAGCGCAGCGCATCAGGCATTGCCGGATGGCGGCACAAGCGCCTTATCCGGCCTACAAAACCACAAAACGTTATGCCGCATCCGCCAGAACAAACATGCCGTACGGATGGATTTCAAGAT  >  NC_000913/277607‑277805

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.