New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1433840 =	NA (NA)	5 (0.050)	5/166	NT	NA	intergenic (‑166/+151)	pinR/ynaE	Rac prophage; putative site‑specific recombinase/cold shock protein, Rac prophage
	?	NC_000913	1433862 =	NA (NA)					intergenic (‑188/+129)	pinR/ynaE	Rac prophage; putative site‑specific recombinase/cold shock protein, Rac prophage

GCATATTTGTATGTACACGTTCGAAAATAAACGAATGCGTATGCAACCCCGTAATTTTGGTGAGACCCAAAATCGATTTTGTGAAAAATGGCTTTAACTCGGTTTGTTTTTCGAGTTCCGGGCGGACTCAAGGAAG  >  NC_000913/1433745‑1433880                                                                                                |                                         gCATATTTGTATGTACACGTTCGAAAATAAACGAATGCGTATGCAACCCCGTAATTTTGGTGAGACCCAAAATAAAAAAAAAAAAAAATGGCTTTAACTc                                      <  2:2745824/100‑1 (MQ=1)                                     gcttATGCAACCCAGTAATTTTGGTGAGACCCAAGATCGATTTTGTGAAAAATGGCTTTAACTCGGTTTGTTTTTCGAGTTCCGGGCGGACTCAAGgaag  <  2:968886/97‑1 (MQ=0)                                                                                                |                                         GCATATTTGTATGTACACGTTCGAAAATAAACGAATGCGTATGCAACCCCGTAATTTTGGTGAGACCCAAAATCGATTTTGTGAAAAATGGCTTTAACTCGGTTTGTTTTTCGAGTTCCGGGCGGACTCAAGGAAG  >  NC_000913/1433745‑1433880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.