New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2118622NA (NA)6 (0.060) 3/168 NT NA noncoding (157/186 nt) REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
?NC_000913 = 2118649 NA (NA)noncoding (184/186 nt) REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences

Only 100 of 160 total aligned reads displayed.

AGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGAC  >  NC_000913/2118523‑2118720
                                                                                                   |                                                                                                  
aGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGa                                                                                                    >  1:438185/1‑100 (MQ=255)
 ggACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGCCGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAc                                                                                                   >  2:1853685‑M1/1‑99 (MQ=255)
 ggACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAc                                                                                                   <  1:1691313‑M1/100‑2 (MQ=255)
 ggACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAc                                                                                                   >  1:900286‑M1/1‑99 (MQ=255)
  gACGGGTAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcg                                                                                                  <  2:2525448‑M1/100‑3 (MQ=255)
  gACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACCGAACCGTAGGAcg                                                                                                  >  2:1820311‑M1/1‑98 (MQ=255)
    cGGATAAGGCGTTCACGCGGCAGCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcgg                                                                                                 <  2:2687797‑M1/99‑4 (MQ=255)
    cGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcgga                                                                                                >  1:2426064‑M1/1‑96 (MQ=255)
     ggATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcggct                                                                                               >  2:2355410‑M1/1‑95 (MQ=255)
      naTAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATa                                                                                              >  1:1037377/2‑100 (MQ=255)
      gATAAGGCGTTCACGCCGCATCCGGCATCCAGTGCCTGATGCGCCGCTGGCGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATa                                                                                              <  1:816450/100‑1 (MQ=255)
         aaGGGGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAGGTCCCGAGCACAGAACCGTAGGAcggatn                                                                                              <  2:1473695‑M1/97‑7 (MQ=255)
           ggCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCg                                                                                         >  1:442593/1‑100 (MQ=255)
              gTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGttt                                                                                      <  1:1840450/100‑1 (MQ=255)
                tCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTa                                                                                    <  2:1866016/100‑1 (MQ=255)
                tCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTa                                                                                    >  2:703731/1‑100 (MQ=255)
                   cgccgcATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAcgc                                                                                 <  1:589960/100‑1 (MQ=255)
                   cgccgcATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTAcgc                                                                                 <  1:2253146/100‑1 (MQ=255)
                          tCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGAcggatgcggcgtaaaacgccttatcc                                                                          <  1:866709‑M1/100‑27 (MQ=255)
                           ctgccattcAGTGCCTGATGCGACGCTGACGCGTGTTATCAGGCATACAGGTCCCGAGCACGGAACCGTAGGAcggatgcggcgtaaaacgccttatcc                                                                          <  2:1892793‑M1/95‑27 (MQ=255)
                           ccGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCG                                                                         <  1:1603377‑M2/100‑1 (MQ=255)
                           ccGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCG                                                                         <  1:1002209‑M2/100‑1 (MQ=255)
                            cGGCATTCAGTGGTTGTTGCGACGCTGACGCGTCTTATCAGGCCTACAGTTCCCGAGCACAGTACCGTAGGACGGATAAGGCGTTTTGCGCCGCATCC                                                                          >  2:2080984‑M2/1‑98 (MQ=255)
                            cGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCgg                                                                        >  1:771698/1‑100 (MQ=255)
                             ggCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGc                                                                       >  1:1300377/1‑100 (MQ=255)
                             ggCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGc                                                                       >  1:1705534/1‑100 (MQ=255)
                             gccactctgTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCAt                                                                            <  2:1046097/87‑1 (MQ=255)
                                aTTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAAc                                                                    <  1:1993990/100‑1 (MQ=255)
                                 ttCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAAcc                                                                   >  1:2080807/1‑100 (MQ=255)
                                 ttCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAAcc                                                                   <  1:1536445/100‑1 (MQ=255)
                                  tCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCTCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAAc                                                                    <  2:451073/98‑1 (MQ=255)
                                  tCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCg                                                                  <  1:2072397/100‑1 (MQ=255)
                                     gTGCCTGATGCTACGCTAACGCGTCTTATCAGACCTACAAGATCCAAGCCCAGCCCCCCAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTg                                                               >  1:163140/1‑100 (MQ=9)
                                      tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGtt                                                                <  1:2369373/98‑1 (MQ=255)
                                       gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGt                                                                 <  2:1145932/96‑1 (MQ=255)
                                       gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTc                                                             <  2:2331318/100‑1 (MQ=255)
                                        ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCg                                                            <  2:1218853/100‑1 (MQ=255)
                                          tGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGa                                                          >  1:1347645/1‑100 (MQ=255)
                                           gATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGaa                                                         >  2:2425185/1‑100 (MQ=255)
                                             tGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGCTAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAAcc                                                       >  2:2235228/1‑100 (MQ=255)
                                              gCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCg                                                      <  1:2022960/100‑1 (MQ=255)
                                               agacgcgtcagcgTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGa                                                     >  2:1098574/11‑100 (MQ=255)
                                                gACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGaa                                                    >  1:498672/1‑100 (MQ=255)
                                                 aCGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGaaa                                                   >  1:335872/1‑100 (MQ=255)
                                                 aCGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGaaa                                                   <  2:64144/100‑1 (MQ=255)
                                                 aCGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGaaa                                                   <  1:1111045/100‑1 (MQ=255)
                                                  cGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGaaaa                                                  >  1:1157237/1‑100 (MQ=255)
                                                  cGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGaaaa                                                  >  2:1802835/1‑100 (MQ=255)
                                                  cGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGGAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCg                                                      <  2:578990/96‑1 (MQ=255)
                                                   gCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGTCGCATCCGGCAACCGTTGTCGGAACCGAAAAc                                                 <  1:2605784/100‑1 (MQ=255)
                                                   gCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAAc                                                 <  2:2305542/100‑1 (MQ=255)
                                                      gACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAg                                               <  2:2357450/99‑1 (MQ=255)
                                                       aCGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCa                                             >  1:1766612/1‑100 (MQ=255)
                                                        cgcgTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCaa                                            >  1:930612/1‑100 (MQ=255)
                                                         gcgTCTTATCAGGCCTACAGGTCCCGAGCACAGCACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAAc                                           <  2:2025775/100‑1 (MQ=255)
                                                         gcgTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAAc                                           <  2:330500/100‑1 (MQ=255)
                                                          cgTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACt                                          >  2:2168430/1‑100 (MQ=255)
                                                           gTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTc                                         >  2:168133/1‑100 (MQ=255)
                                                           gTCTTATCAGGCATACAGGTCCCGCGCACAGCACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTc                                         <  1:125939/100‑1 (MQ=255)
                                                             cTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCAc                                       <  1:1186773/100‑1 (MQ=255)
                                                             cTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCAc                                       <  1:591824/100‑1 (MQ=255)
                                                               tATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCAccc                                     >  2:938638/1‑100 (MQ=255)
                                                               tATCAGGCCTACAGGTCCAGAGCACAGAACAGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTTTCGGAACCGAAAACAGCAACTCAtcc                                     >  2:505972/1‑100 (MQ=25)
                                                                aTCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCAcccc                                    <  2:45352/100‑1 (MQ=255)
                                                                aTCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCAcccc                                    >  1:314451/1‑100 (MQ=255)
                                                                  cAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACcccgc                                  >  2:1026930/1‑100 (MQ=255)
                                                                   aGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACcccgcc                                 <  2:288263/100‑1 (MQ=255)
                                                                   aGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACcccgcc                                 <  2:2669190/100‑1 (MQ=255)
                                                                     gCCTACAGGTCCCGAGTACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACcccgcccg                               <  2:1603370/100‑1 (MQ=255)
                                                                     gCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACcccgcccn                               <  2:1037373/100‑2 (MQ=255)
                                                                        tACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTaa                            >  1:2496643/1‑100 (MQ=255)
                                                                           aGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAg                         <  1:525486/100‑1 (MQ=255)
                                                                             gTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGca                       <  2:771695/100‑1 (MQ=255)
                                                                               cccGAGCACAGAACCGTAGGCCGGATAAGGCGGGTTACGCCTCATCCGGCCACCGTTGTCGGCAGCGAAAACAGCAGCTCACCCCGCCCGTAAACGcatt                     >  2:1345534/1‑100 (MQ=25)
                                                                                 cGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGGAAAAGcatgt                    >  1:233387/1‑97 (MQ=255)
                                                                                     cacaGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcatt               <  2:1300372/100‑1 (MQ=255)
                                                                                     cacaGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcatt               >  1:2432520/1‑100 (MQ=255)
                                                                                     cacaGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcatt               <  1:1467745/100‑1 (MQ=255)
                                                                                      acaGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcattt              >  2:83015/1‑100 (MQ=255)
                                                                                       caGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcatttt             >  1:1384403/1‑100 (MQ=255)
                                                                                       caGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcatttt             >  2:1655198/1‑100 (MQ=255)
                                                                                       caGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcatttt             >  2:1200280/1‑100 (MQ=255)
                                                                                       caGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGcattttcatttt             >  1:254032/1‑100 (MQ=255)
                                                                                       caGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAAACGTTGTCGGAACCGAAAACAGCAACTCCCCCCGCCCGTAAAAGcattttcatttt             >  2:294639/1‑100 (MQ=255)
                                                                                        aGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCAttttt            <  1:277421/100‑1 (MQ=255)
                                                                                         gAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGGATTTTCAtttttt           >  2:707256/1‑100 (MQ=255)
                                                                                         gAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCAtttttt           >  1:653989/1‑100 (MQ=255)
                                                                                         gAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCAtttttt           >  1:1978489/1‑100 (MQ=255)
                                                                                           aCCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCg         <  1:1384237/100‑1 (MQ=255)
                                                                                            ccGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGc        >  1:2689139/1‑100 (MQ=255)
                                                                                              gTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTg      <  1:1544112/100‑1 (MQ=255)
                                                                                              gTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTg      <  1:1964828/100‑1 (MQ=255)
                                                                                               tAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGc     <  1:1173898/100‑1 (MQ=255)
                                                                                               tAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGc     <  1:758977/100‑1 (MQ=255)
                                                                                                aGGACGGATAAGGCGGGTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCATCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCg    <  1:505973/100‑1 (MQ=255)
                                                                                                 ggACGGATAAGGCGTTTTACGCCGCATCCGtcctacggttctgtgctcgggacctgtaggcctgataagacgcgtcagcgtcgcatcaggcactgaatgc   <  1:1038029‑M2/100‑71 (MQ=255)
                                                                                                 ggACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGa   >  2:1404602/1‑100 (MQ=255)
                                                                                                 ggACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGa   >  1:647762/1‑100 (MQ=255)
                                                                                                  gACGGATAAGGCGTTTTACGCCGCATCCGtcctacggttctgtgctcgggacctgtaggcctgataagacgcgtcagcgtcgcatcaggcactgaatgcc  <  1:2548440‑M2/100‑72 (MQ=255)
                                                                                                  gACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGAc  <  2:2065299/100‑1 (MQ=255)
                                                                                                   |                                                                                                  
AGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTTTACGCCGCATCCGGCAACCGTTGTCGGAACCGAAAACAGCAACTCACCCCGCCCGTAAAAGCATTTTCATTTTTTCGCTGCGAC  >  NC_000913/2118523‑2118720

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.