New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729418	19 (0.190)	15 (0.160)	10/166	NT	45.9%	noncoding (27/76 nt)	gltW	tRNA‑Glu
	?	NC_000913	3943480 =	NA (NA)					noncoding (46/76 nt)	gltU	tRNA‑Glu

GTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGC  >  NC_000913/2729319‑2729517                                                                                                    |                                                                                                    gTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGT                                                                                                     >  1:757053‑M1/1‑100 (MQ=255)   cTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGgtgt                                                                                                   <  2:1399159/100‑1 (MQ=35)    tGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGTCGTCTCCTAGGTGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTc                                                                                                  >  2:275572/1‑100 (MQ=255)    tGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTc                                                                                                  >  2:371389/1‑100 (MQ=35)     gTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTcc                                                                                                 >  2:196080/1‑100 (MQ=33)       tttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTg                                                                                               >  1:328371/1‑100 (MQ=33)       tttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTg                                                                                               >  1:2635388/1‑100 (MQ=33)        ttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTgg                                                                                              <  1:1417967/100‑1 (MQ=33)        ttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTgg                                                                                              <  1:1452051/100‑1 (MQ=33)        ttGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTgg                                                                                              >  1:2402421/1‑100 (MQ=33)          gagaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGc                                                                                            <  2:250921/100‑1 (MQ=33)          gagaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGc                                                                                            >  2:1315063/1‑100 (MQ=33)           agaTATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCATGGGcc                                                                                           <  1:1747609/100‑1 (MQ=18)           agaTATTGAGGTCGGCGACTTTAACTCACAAACCTGCAAGTGGCGTCACCTAGGAGATTAGAACCCCTGTTACCGCCGTGAAAGGGTGGTGTCCTGGGcc                                                                                           <  2:1133438/100‑1 (MQ=11)           agaTATGGAGGTTTGCGACTTTCACTCTCAACCCATCATGTGGCGTCCCCTAGTTGATTCGACCCCCTGTTACCGCCGTGAATGGGCGGTGTACTGGGcc                                                                                           <  2:690628/100‑1 (MQ=11)            gaTATTGAGGTCGGCGACTGTCACTCACAAACCGGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTGCCGCCGTGAAAGGGCGGTGCCCTgg                                                                                              <  2:1553841/96‑1 (MQ=11)             atatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCctc                                                                                         <  1:724052/100‑1 (MQ=33)              tatTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCctct                                                                                        <  1:737976/100‑1 (MQ=33)               atTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTa                                                                                       <  1:1344402/100‑1 (MQ=33)               atTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTa                                                                                       <  1:1366715/100‑1 (MQ=33)               atTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTa                                                                                       <  1:1241827/100‑1 (MQ=33)                ttGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGTGCGGTGTCCTGGGCCTCTAg                                                                                      <  2:1677632/100‑1 (MQ=17)                  gAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAgtc                                                                                    <  1:1870861/100‑3 (MQ=11)                         gtgacTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCCTTTCACGGCGGTaacaggggttcgaatcccctaggg                                                                             <  1:589292‑M1/98‑25 (MQ=255)                                                    ggtgTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGTGACACGAAAATTGCTTATCACGCGTTGc                                                  >  2:2037296/4‑100 (MQ=0)                                                           ccTAGGGGATTCGAACCCCTGTTACCGGCGTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacc                                           >  1:2072250‑M1/1‑42 (MQ=255)                                                                   aTTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaa                                   >  1:2667992‑M1/1‑34 (MQ=255)                                                                      cGAACCCCTGTTACCGCCGTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatat                                >  2:2689015‑M1/1‑31 (MQ=255)                                                                         aCCCCTGTTACCGCCGTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctc                             >  1:2381961‑M1/1‑28 (MQ=255)                                                                           cccTGTTACCGCCGTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctcaa                           >  2:2268562‑M1/1‑26 (MQ=255)                                                                            ccTGTTACCGCCGTGAAAGGGCGGTgacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcgccgacctcaatatctcaaa                          >  1:513929‑M1/1‑25 (MQ=255)                                                                              tGTTACCGCCGTGAAAGGGCGGTgacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctcaaaac                        >  2:248201‑M1/1‑23 (MQ=255)                                                                              tGTTACCGCCGTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctcaaaac                        >  2:200215‑M1/1‑23 (MQ=255)                                                                               gTTACCGCCGTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcgccgaccttaatatctcaaaact                       >  1:2465993‑M1/1‑22 (MQ=255)                                                                                ttACCGCCGTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctcaaaactc                      >  2:2657139‑M1/1‑21 (MQ=255)                                                                                 tACCGCCGTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctcaaaactca                     >  2:1102051‑M1/1‑20 (MQ=255)                                                                                  aCCGCCGTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctcaaaactcat                    >  2:458421‑M1/1‑19 (MQ=255)                                                                                  aCCGCCGTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctcaaaactcat                    >  1:2296807‑M1/1‑19 (MQ=255)                                                                                   ccgccgTGAAAGGGCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcgccgacctcaatatctcaaaacagact                   >  1:2520254‑M1/1‑18 (MQ=255)                                                                                                gCGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctcaaaactcatcttcgggtgatgtt      <  2:1772689‑M1/100‑96 (MQ=255)                                                                                                 cGGTaacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctcaaaactcatcttcgggtgatgttn     <  2:788395‑M1/100‑97 (MQ=255)                                                                                                    taacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctcaaaactcatcttcgggtgatgtttgag  <  2:1984391‑M1/100‑100 (MQ=255)                                                                                                    taacaggggttcgaatcccctaggggacgccacttgctggtttgtgagtgaaagtcacctgccttaatatctcaaaactcatcttcgggtgatgtttgag  <  2:1296816‑M1/100‑100 (MQ=255)                                                                                                    |                                                                                                    GTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAACCAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGC  >  NC_000913/2729319‑2729517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.