New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3277819 =NA (NA)7 (0.080) 5/162 NT NA noncoding (1/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3277844 = NA (NA)noncoding (26/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 124 total aligned reads displayed.

CGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGG  >  NC_000913/3277720‑3277918
                                                                                                   |                                                                                                   
atgatcattgttgatgaaggcattcctgcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccg                                                                                                     >  1:992320‑M1/100‑100 (MQ=255)
      cAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAAc                                                                                               >  1:557244/1‑100 (MQ=255)
      cAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAAc                                                                                               >  1:1373826/1‑100 (MQ=255)
        gCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGc                                                                                             >  2:1448/1‑100 (MQ=255)
        gCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACACAAGAAACCCATTGATGGTGTTCACAATGCACGCCCAAc                                                                                               >  2:1015629/1‑98 (MQ=255)
            aaTGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTc                                                                                         >  1:2274264/1‑100 (MQ=255)
               gTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCgtg                                                                                      >  1:1369539/1‑100 (MQ=255)
               gTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCgtg                                                                                      <  1:182692/100‑1 (MQ=255)
               ccgatctagagGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCgtg                                                                                      <  2:2663860/93‑1 (MQ=255)
                  aaaaaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTg                                                                                   >  1:672856/1‑100 (MQ=255)
                    aaaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGAc                                                                                 <  2:1369533/100‑1 (MQ=255)
                     aaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGAcc                                                                                <  1:155831/100‑1 (MQ=255)
                     aaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGAcc                                                                                >  1:2071919/1‑100 (MQ=255)
                      agagGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCa                                                                               >  1:199208/1‑100 (MQ=255)
                           aCATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCggg                                                                          >  1:2546602/1‑100 (MQ=255)
                            cggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGc                                                                         >  1:483377‑M1/72‑100 (MQ=255)
                             ggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCa                                                                        >  2:37025‑M1/71‑100 (MQ=255)
                              tcctccTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCAt                                                                       >  1:1202036/1‑100 (MQ=255)
                                tagccttgaaggactgccaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGAATTCGTGTTGACCAGCGGGCATcc                                                                     >  2:792968‑M1/68‑100 (MQ=255)
                                tagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATcc                                                                     >  2:1204243‑M1/68‑100 (MQ=255)
                                  cctGCCGGCTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCtt                                                                   <  1:2405572/100‑1 (MQ=255)
                                  cctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCtt                                                                   <  2:26859/100‑1 (MQ=255)
                                  cctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCtt                                                                   >  1:2280634/1‑100 (MQ=255)
                                   ctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCttt                                                                  <  1:2159920/100‑1 (MQ=255)
                                    tGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCCTTCGTGTTAACCAGCGGACATCCTTtc                                                                 >  2:180753/1‑100 (MQ=255)
                                    tGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCttt                                                                  >  1:378830/1‑99 (MQ=255)
                                    tGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtc                                                                 <  2:563831/100‑1 (MQ=255)
                                    tGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtc                                                                 >  1:1384781/1‑100 (MQ=255)
                                     tggaaggactgcgaaaggccggtgttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCttt                                                                  >  2:399035‑M1/63‑98 (MQ=255)
                                     gCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtct                                                                <  1:993173/100‑1 (MQ=255)
                                      ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTTATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                               <  2:1933556/100‑1 (MQ=255)
                                      ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCTGGCATCCTTtctc                                                               <  1:1865868/100‑1 (MQ=255)
                                      ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                               <  2:101493/100‑1 (MQ=255)
                                      ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                               <  1:1106409/100‑1 (MQ=255)
                                      ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                               <  1:676397/100‑1 (MQ=255)
                                      ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                               <  2:837465/100‑1 (MQ=255)
                                      ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                               >  1:392810/1‑100 (MQ=255)
                                      ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                               <  2:515373/100‑1 (MQ=255)
                                       cGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtct                                                                <  1:2167836/98‑1 (MQ=255)
                                        gACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCAc                                                             <  2:2071906/100‑1 (MQ=255)
                                        gACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCAc                                                             <  2:1239370/100‑1 (MQ=255)
                                        gACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCAc                                                             <  2:1034588/100‑1 (MQ=255)
                                         acggggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACt                                                            <  2:1970317/97‑1 (MQ=255)
                                          cTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCGTTGATGGTGTTCACAACGCCCGCCGAACGAATTCGCGTTGCCCAGCGGGCATCCTCTCCCACTc                                                           >  2:2581388/1‑100 (MQ=255)
                                            gggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTccc                                                         >  1:116497/1‑100 (MQ=255)
                                            gggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTccc                                                         >  2:283138/1‑100 (MQ=255)
                                            gggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTAGTGTTGACCAACGAGCATACTTTCTCACTccc                                                         >  2:2471926/1‑100 (MQ=255)
                                             ggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcccc                                                        <  1:2582125/100‑1 (MQ=255)
                                                 cttccgatctgagaAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGAcc                                                    <  2:1742868/90‑1 (MQ=255)
                                                 aCCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCACTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGAc                                                     >  2:345265/1‑99 (MQ=255)
                                                  cccTCACCCGAGAAACAGAAGAAACCCATTGATGCTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCa                                                   >  2:426256/1‑100 (MQ=255)
                                                      cACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAAt                                               >  2:1376234/1‑100 (MQ=255)
                                                       aCCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATc                                              >  1:2142550/1‑100 (MQ=255)
                                                       aCCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATc                                              >  1:2340241/1‑100 (MQ=255)
                                                        cccGAGAAACAGAAGAAACCCATTGATGGTGTTCCCCATTCCCGCCGAACGCATTCGTGTTGCCCAGCGGGCATCCTTTCTCACTCCCCGACCAGAGTCa                                             >  2:2333703/1‑100 (MQ=255)
                                                        cccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGCCCAGCTGGCATCCTGTCTCACTCCCCGACCAGAATCa                                             >  2:1851298/1‑100 (MQ=255)
                                                        cccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATc                                              <  2:1512203/99‑1 (MQ=255)
                                                        cccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCa                                             >  1:29131/1‑100 (MQ=255)
                                                           gagaAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGatcggaag                                          >  1:1742875/1‑93 (MQ=255)
                                                              aaaCAGAAGAAACCCATTGATGGTGTTCAAAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCaa                                       <  1:685647/100‑1 (MQ=255)
                                                               aaCAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAc                                      <  1:167604/100‑1 (MQ=255)
                                                                aCAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAcc                                     >  1:1337652/1‑100 (MQ=255)
                                                                 cAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAccc                                    >  2:1217718/1‑100 (MQ=255)
                                                                  agaagaAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAcccc                                   >  2:319035/1‑100 (MQ=255)
                                                                   gaagaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCa                                  >  1:2430847/1‑100 (MQ=255)
                                                                        aaCCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCtt                             >  2:925557/1‑100 (MQ=255)
                                                                          cccATAGATGGTGTTCACAATGCGCGACGAACGCATTAGTGTTGACCGGGGGGCATCCTTCCTCACTCCCCGACCATAATCACTGCAACCCCAGCCTTTc                           >  2:1611921/1‑100 (MQ=255)
                                                                           ccATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCg                          <  2:312986/100‑1 (MQ=255)
                                                                            cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGcagatcgg                         >  2:1884296/1‑93 (MQ=255)
                                                                            cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                         <  2:2701903/100‑1 (MQ=255)
                                                                            cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                         <  1:628159/100‑1 (MQ=255)
                                                                            cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                         <  2:661219/100‑1 (MQ=255)
                                                                            cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                         <  1:2393252/100‑1 (MQ=255)
                                                                               tGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGt                      >  2:434006/1‑100 (MQ=255)
                                                                                gATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTc                     <  2:2131864/100‑1 (MQ=255)
                                                                                 aTGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTcc                    <  2:1979814/100‑1 (MQ=255)
                                                                                 aTGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTcc                    <  2:2146311/100‑1 (MQ=255)
                                                                                   ggTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCtt                  >  2:2413746/1‑100 (MQ=255)
                                                                                   ggTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCtt                  <  1:921032/100‑1 (MQ=255)
                                                                                   ggTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCtt                  >  1:2154679/1‑100 (MQ=255)
                                                                                     tgtTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTcc                >  1:1638030/1‑100 (MQ=255)
                                                                                       ttCACAATGCCCGCCGAACGCATTCGTGTTGGCCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAg              <  1:558120/100‑1 (MQ=255)
                                                                                       ttCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAg              <  2:852774/100‑1 (MQ=255)
                                                                                       ttCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAg              <  2:1087225/100‑1 (MQ=255)
                                                                                        tCACAATGCCCGCCGAACGCATTCGTGTTTACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATTACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg             <  2:1653631/100‑1 (MQ=255)
                                                                                         cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc            >  1:2056435/1‑100 (MQ=255)
                                                                                         cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc            <  2:429870/100‑1 (MQ=255)
                                                                                          acaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCt           >  2:1779720/1‑100 (MQ=255)
                                                                                           caATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTATCTCACTCCCCGACCAGCATCACCTCAACCCCAGCCTTTCGCCGTCCTTCCAGGc            >  2:2404026/1‑98 (MQ=255)
                                                                                            aaTGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTAt         <  1:1448/100‑1 (MQ=255)
                                                                                             atgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATc        >  1:1875463‑M1/7‑100 (MQ=255)
                                                                                               gcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCg      <  2:2313041‑M1/96‑1 (MQ=255)
                                                                                               gcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCg      >  1:2458460‑M1/5‑100 (MQ=255)
                                                                                               gcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCACGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCg      <  2:2034958‑M1/96‑1 (MQ=255)
                                                                                                 ccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCa    >  1:618056‑M1/3‑100 (MQ=255)
                                                                                                 ccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCa    <  2:67788‑M1/98‑1 (MQ=255)
                                                                                                 ccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCa    >  2:2500414‑M1/3‑100 (MQ=255)
                                                                                                   GCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAgg  >  1:1217723‑M1/1‑100 (MQ=255)
                                                                                                   GCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAgg  >  1:10546‑M1/1‑100 (MQ=255)
                                                                                                   GCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAgg  >  1:1890952‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGG  >  NC_000913/3277720‑3277918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.