New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3426836 =	NA (NA)	22 (0.240)	8/164	NT	NA	intergenic (‑53/+122)	rrlD/alaU	23S ribosomal RNA of rrnD operon/tRNA‑Ala
	?	NC_000913	3426854 =	NA (NA)					intergenic (‑71/+104)	rrlD/alaU	23S ribosomal RNA of rrnD operon/tRNA‑Ala

ATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGG  >  NC_000913/3426755‑3426919                                                                                                    |                                                                  aTCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCa                                                                   <  2:1078017/100‑1 (MQ=33) aTCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCa                                                                   >  2:2616050/1‑100 (MQ=32) aTCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCa                                                                   <  1:1718178/100‑1 (MQ=33)   ccACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAgt                                                                 >  2:25127/1‑100 (MQ=33)   ccACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAgt                                                                 >  1:2172925/1‑100 (MQ=33)    cACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGACGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAgtg                                                                >  2:1472194/1‑100 (MQ=18)     aCCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAgtgt                                                               <  1:2077582/100‑1 (MQ=33)      ccGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGtt                                                              <  1:1265996/100‑1 (MQ=33)       cGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGttt                                                             <  2:1091707/100‑1 (MQ=33)       cGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGttt                                                             <  1:198580/100‑1 (MQ=33)        gtgtACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGtttn                                                            <  2:1498344/100‑2 (MQ=18)          gtACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCaa                                                          <  2:1062686/100‑1 (MQ=33)          gtACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCaa                                                          >  1:46797/1‑100 (MQ=33)          gtACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCaa                                                          >  1:1127112/1‑100 (MQ=33)          gtACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCa                                                           >  1:177091/1‑99 (MQ=32)           tACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAAt                                                         >  1:794313/1‑100 (MQ=33)           tACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAAt                                                         <  2:483804/100‑1 (MQ=32)            aCGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAAtt                                                        <  1:2645086/100‑1 (MQ=33)            aCGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAAtt                                                        >  2:1943151/1‑100 (MQ=32)             cGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAAttt                                                       <  1:1623222/100‑1 (MQ=33)             cGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAAttt                                                       >  1:1094641/1‑100 (MQ=33)              gCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAAtttt                                                      >  1:1728603/1‑100 (MQ=33)               cTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTc                                                     <  2:1781077/100‑1 (MQ=33)               cTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTc                                                     <  1:25127/100‑1 (MQ=33)                ttAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCa                                                    <  1:765214/100‑1 (MQ=33)                ttAGTCGCTTAACCTCACAACCCAAAGATGTTTCACTTCAGATTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCa                                                    <  1:262456/100‑1 (MQ=16)                 tAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAg                                                   >  2:1222870/1‑100 (MQ=33)                  aGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGc                                                  <  2:957016/100‑1 (MQ=33)                  aGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGc                                                  <  1:118093/100‑1 (MQ=33)                   gTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCt                                                 >  1:926661/1‑100 (MQ=33)                   gTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCt                                                 >  1:1212677/1‑100 (MQ=33)                     cGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTg                                               >  1:648414/1‑100 (MQ=33)                     cGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTg                                               >  1:2376385/1‑100 (MQ=33)                     cGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTg                                               >  2:2317882/1‑100 (MQ=32)                      gCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGa                                              >  2:2746728/1‑100 (MQ=33)                      gCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGa                                              >  2:2074341/1‑100 (MQ=33)                      gCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGa                                              >  1:175434/1‑100 (MQ=33)                       cTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGAt                                             <  1:1646441/100‑1 (MQ=33)                         tAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATcc                                           >  2:1245772/1‑100 (MQ=32)                           aCCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGAATTACGAACAACTTTCGTTGTTAAGTGTTTCAATTTTCAGCTTGATcc                                           >  2:948670/1‑98 (MQ=255)                            ccTCACATGCCGAAGATGTTTCACTTCAGAGTTGCTTAAATTTGACAGACTCACGAACAACTTTCGGTGTTCAGTGTTTCGATTTTCAGCTTGaa                                             <  2:1973296/95‑2 (MQ=11)                             cTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAt                                       <  2:1825699/100‑1 (MQ=33)                             cTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAt                                       >  2:2384797/1‑100 (MQ=33)                             cTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAt                                       >  1:2092469/1‑100 (MQ=32)                             cTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAt                                       <  2:466643/100‑1 (MQ=32)                              tCACAACCCGAATATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAtt                                      <  2:137307/100‑1 (MQ=18)                               cacaACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAttt                                     >  1:2498425/1‑100 (MQ=33)                               cacaACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAttt                                     >  2:630120/1‑100 (MQ=33)                                acaACCCGTAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAtttt                                    <  1:285287/100‑1 (MQ=17)                                acaACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAtttt                                    <  2:2712220/100‑1 (MQ=32)                                 caACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGAttttt                                   >  1:1308727/1‑100 (MQ=33)                                   aCCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTaa                                 >  2:1281283/1‑100 (MQ=32)                                     ccGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAag                               <  1:1617724/100‑1 (MQ=33)                                     ccGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAag                               <  1:2153308/100‑1 (MQ=32)                                      cGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACATCTTTAGTTGTTCAGTGTTTCAATTTGCAGCTTGATCCAGATTTTTAAaga                              >  2:911621/1‑100 (MQ=255)                                       gAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAagag                             <  1:1254395/100‑1 (MQ=33)                                       gAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAagag                             <  1:2662886/100‑1 (MQ=33)                                       gAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAagag                             <  1:640163/100‑1 (MQ=33)                                       gAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAagag                             <  2:887010/100‑1 (MQ=32)                                       gAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAagag                             <  1:1243141/100‑1 (MQ=33)                                       gAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAagag                             <  1:1279972/100‑1 (MQ=33)                                        aaGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGc                            <  1:897391/100‑1 (MQ=33)                                         aGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCa                           <  2:1212672/100‑1 (MQ=33)                                           aTGTTTCACTTCAGAGTTGCGAAAATTTGTGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCACTTTTCAGCTTGATCCAGATTTTTAAAGAGCaaa                         <  2:1655933/100‑1 (MQ=12)                                            tGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCaaaa                        >  1:778513/1‑100 (MQ=35)                                              tttCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACt                      >  1:1355810/1‑100 (MQ=35)                                                tCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGATTCAATTTTAAGCTTGATCCAGATTTTTAAAGAGCAAAACTTc                    >  2:2510147/1‑100 (MQ=255)                                                    ttCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAg                <  2:929391/100‑1 (MQ=35)                                                     tCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGt               >  1:192860/1‑100 (MQ=35)                                                       agagTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGa             <  2:1161954/100‑1 (MQ=32)                                                       agagTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGa             <  1:860801/100‑1 (MQ=32)                                                        gagTTGTGAAAATTTGTGGGACTCGTGATCAACTTTAGTTGTTCAGTGTTTCACTTCTCAGCTTGATCCTGATTTTTAAAGAGCAAAACTTCGc                  <  2:1770130/94‑1 (MQ=11)                                                        gagTTGTGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATGTTTAAAGAGCAAAACTTCGCAGTGaa            <  2:175621/100‑1 (MQ=9)                                                         agTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAAc           <  2:1728595/100‑1 (MQ=11)                                                                   atgtGAGAGACTCACGAACAACTTTCGGTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGCTTTGTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAgg  <  2:2633014/96‑1 (MQ=1)                                                                                                    |                                                                  ATCCACCGTGTACGCTTAGTCGCTTAACCTCACAACCCGAAGATGTTTCACTTCAGAGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAAACTTCGCAGTGAACCTTTGCAGG  >  NC_000913/3426755‑3426919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.