New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3943543	NA (NA)	7 (0.080)	5/156	NT	100%	intergenic (+33/‑161)	gltU/rrlC	tRNA‑Glu/23S ribosomal RNA of rrnC operon
	?	NC_000913	= 3943583	0 (0.000)					intergenic (+73/‑121)	gltU/rrlC	tRNA‑Glu/23S ribosomal RNA of rrnC operon

GGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAA  >  NC_000913/3943484‑3943682                                                                                                    |                                                                                                    ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGGGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT                                                                                                     >  1:1719140‑M2/1‑100 (MQ=255) ggggTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT                                                                                                     <  2:145907‑M2/100‑1 (MQ=255)                                                       tGCCTTAATATCTAAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcg                                               <  1:1355754‑M2/100‑55 (MQ=255)                                                       gaccttAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcg                                               <  2:1198133‑M2/98‑55 (MQ=255)                                                        acctTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcga                                              <  2:1023096‑M2/99‑56 (MQ=255)                                                          cTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaac                                            <  2:1996941‑M2/100‑58 (MQ=255)                                                           ttAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacc                                           <  1:880932‑M2/100‑59 (MQ=255)                                                              atatCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggtgattcgaacccct                                        <  1:2548206‑M2/100‑62 (MQ=255)                                                                   tcAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttac                                   <  1:922410‑M2/100‑67 (MQ=255)                                                                                          tttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctg            >  2:2746703‑M2/1‑11 (MQ=255)                                                                                           ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg           >  2:432381‑M2/1‑10 (MQ=255)                                                                                           ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg           <  1:487125‑M2/100‑91 (MQ=255)                                                                                           ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg           >  1:638871‑M2/1‑10 (MQ=255)                                                                                           ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcatgg           <  2:1996194‑M2/100‑91 (MQ=255)                                                                                            tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggg          >  1:2520537‑M2/1‑9 (MQ=255)                                                                                            tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggg          >  2:366771‑M2/1‑9 (MQ=255)                                                                                            tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggg          <  2:2270784‑M2/100‑92 (MQ=255)                                                                                            tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggg          >  2:1553475‑M2/1‑9 (MQ=255)                                                                                             gagaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggc         <  1:980729‑M2/100‑93 (MQ=255)                                                                                             gagaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggc         <  1:154116‑M2/100‑93 (MQ=255)                                                                                              agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc        >  2:2585208‑M2/1‑7 (MQ=255)                                                                                              agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc        >  1:1351012‑M2/1‑7 (MQ=255)                                                                                              agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc        >  1:1617680‑M2/1‑7 (MQ=255)                                                                                               gaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcct       <  1:1519338‑M2/100‑95 (MQ=255)                                                                                               gaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc        <  2:1356667‑M2/99‑94 (MQ=255)                                                                                                atatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctc      >  1:511151‑M2/1‑5 (MQ=255)                                                                                                 tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtttcctgggcctct     >  1:1811514‑M2/1‑4 (MQ=255)                                                                                                 tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct     <  2:1317089‑M2/100‑97 (MQ=255)                                                                                                 tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct     <  2:27159‑M2/100‑97 (MQ=255)                                                                                                 tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct     <  1:2113049‑M2/100‑97 (MQ=255)                                                                                                 tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct     <  2:881607‑M2/100‑97 (MQ=255)                                                                                                  atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta    >  1:2325484‑M2/1‑3 (MQ=255)                                                                                                  atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta    >  1:755386‑M2/1‑3 (MQ=255)                                                                                                   ttaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctag   <  2:671233‑M2/100‑99 (MQ=255)                                                                                                   ttaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctag   <  2:697628‑M2/100‑99 (MQ=255)                                                                                                    taaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctaga  >  1:1899630‑M2/1‑1 (MQ=255)                                                                                                    taaggcaggtgactttaactcacaaaccagcacgtggcgtcccctaggggattcgaaccccagttaccgccgtgaaagggcggtgtcctgggcctataga  <  1:2705612‑M2/100‑100 (MQ=255)                                                                                                    |                                                                                                    GGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAA  >  NC_000913/3943484‑3943682

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.