New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4628815 =119 (1.190)5 (0.050) 4/164 NT 4.4% noncoding (121/150 nt) RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site RIP354 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
?NC_000913 4628845 = 110 (1.200)intergenic (+298/+10) nadR/ettA trifunctional protein: nicotinamide mononucleotide adenylyltransferase, ribosylnicotinamide kinase, transcriptional repressor/energy‑dependent translational throttle A
Rejected: Frequency below cutoff threshold.

Only 100 of 153 total aligned reads displayed.

TGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAA  >  NC_000913/4628746‑4628944
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tGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCa                                                                                                     >  1:1694766/1‑100 (MQ=255)
ctctgggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatGCCGGATAAGGCGTTCGCGCCGCATCCGGCa                                                                                                     >  2:1664019‑M1/70‑100 (MQ=255)
cgctgggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatGCCGGATAAGGCGTTCGCGCCGCATCCGGCa                                                                                                     >  1:345642‑M1/70‑100 (MQ=255)
 gctgggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatGCCGGATAAGGCGTTCGCGCCGCATCCGGCAt                                                                                                    >  1:934711‑M1/69‑100 (MQ=255)
 gATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTGACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAt                                                                                                    <  2:1752025/100‑1 (MQ=255)
   tGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAttt                                                                                                  >  1:2186765/1‑100 (MQ=255)
    gggcgcagacgcgctggagccgaagcgtatcaagtacaagcgtattgcgaagtaatgcgtaaaatGCCGGATAAGGCGTTCGCGCCGCATCCGGCAttt                                                                                                  >  2:2577448‑M1/66‑99 (MQ=255)
    gCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAtttt                                                                                                 <  2:2500080/100‑1 (MQ=255)
    gCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAtttt                                                                                                 >  2:489510/1‑100 (MQ=255)
     cGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa                                                                                                >  1:104416/1‑100 (MQ=255)
     cGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTa                                                                                                <  1:865674/100‑1 (MQ=255)
      gACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCAttttcc                                                                                               <  1:1867100/100‑3 (MQ=255)
        cGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGc                                                                                             <  2:387078/100‑1 (MQ=255)
          cTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCAt                                                                                           >  2:2018406/1‑100 (MQ=255)
              ccGCGTCTTATCAGGCCTACCGTTTTACAACGTATTGAAATTGCTGGTCTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACt                                                                                       >  2:1673912/1‑100 (MQ=255)
              ccGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTAc                                                                                        <  2:1252556/99‑1 (MQ=255)
              ccGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACt                                                                                       >  1:2648203/1‑100 (MQ=255)
              ccGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTCGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACt                                                                                       >  1:1972708/1‑100 (MQ=255)
                  gTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGc                                                                                   <  2:1666035/100‑1 (MQ=255)
                   tCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCa                                                                                  <  2:1446038/100‑1 (MQ=255)
                      tATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATa                                                                               >  1:61273/1‑100 (MQ=255)
                       aTCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATAc                                                                              >  2:1227486/1‑100 (MQ=255)
                         cAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATAc                                                                              <  2:1191243/98‑1 (MQ=255)
                          aGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCt                                                                           <  1:166739/100‑1 (MQ=255)
                           ggCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCtt                                                                          >  2:1123187/1‑100 (MQ=255)
                            gCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTg                                                                         <  2:1886595/100‑1 (MQ=255)
                             ccTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGt                                                                        >  1:921268/1‑100 (MQ=255)
                              cTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCAGCATTTTACGCATTACTTCGCAATACGCTTGt                                                                        >  1:1667393/1‑99 (MQ=255)
                              cTACAGTTTTACAAAGTATTGAAATTGATGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTg                                                                         >  2:1745924/1‑98 (MQ=255)
                               tACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTAc                                                                      >  1:418070/1‑100 (MQ=255)
                                aCAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACt                                                                     <  1:711843/100‑1 (MQ=255)
                                 cAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACtt                                                                    <  1:2562567/100‑1 (MQ=255)
                                 cAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACtt                                                                    >  1:1097913/1‑100 (MQ=255)
                                 cAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACtt                                                                    <  1:2057139/100‑1 (MQ=255)
                                 cAGTTTTACAACGTATTGAAATTGCTGGCTTTGTAGGCCGGGTAAGGCGTTCGCACCGCATCCGGCATTTTACGCACTACTTCGCACTACGCTTGTa                                                                       >  1:2339347/1‑97 (MQ=38)
                                   gTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGa                                                                  <  1:2500821/100‑1 (MQ=255)
                                   gTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGa                                                                  <  1:2541422/100‑1 (MQ=255)
                                   gTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGa                                                                  >  1:1033145/1‑100 (MQ=255)
                                     tttACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATa                                                                <  1:627668/100‑1 (MQ=255)
                                     tttACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATGACTTCGCAATACGCTTGTACTTGATa                                                                <  1:1678559/100‑1 (MQ=255)
                                      ttACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATAc                                                               >  2:791300/1‑100 (MQ=255)
                                       tACAACGTATTGAAATTGCTGGTTTTGTAGGCCTGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCATGTACTTGATACg                                                              <  2:1702556/100‑1 (MQ=255)
                                         cAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCt                                                            <  1:2385418/100‑1 (MQ=255)
                                              tATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCCTTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGc                                                       >  2:157050/1‑100 (MQ=255)
                                              tATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGc                                                       <  2:1372421/100‑1 (MQ=255)
                                              tATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGc                                                       >  1:282774/1‑100 (MQ=255)
                                               aTTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCt                                                      <  1:2060872/100‑1 (MQ=255)
                                                ttGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTc                                                     >  1:2684900/1‑100 (MQ=255)
                                                  gAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCa                                                   >  1:1279217/1‑100 (MQ=255)
                                                  gAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCa                                                   >  1:671803/1‑100 (MQ=255)
                                                   aaaTTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAg                                                  <  2:740073/100‑1 (MQ=255)
                                                   aaaTTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAg                                                  <  2:1185239/100‑1 (MQ=255)
                                                     aTTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATAAGCTTGTACTTGGTACGCTTCGGATCCAg                                                  >  1:2482680/1‑98 (MQ=255)
                                                         cTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTc                                            >  1:1412942/1‑100 (MQ=255)
                                                         cTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTc                                            <  1:234929/100‑1 (MQ=255)
                                                            gTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTCATACGCTTCCCCTCCAGCGCctctcc                                         >  2:2588336/1‑98 (MQ=37)
                                                              tttGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTgcgc                                       <  1:2679848/100‑1 (MQ=255)
                                                               ttGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGcc                                      <  1:657120/100‑1 (MQ=255)
                                                               atctAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGcc                                      <  2:1640202/97‑1 (MQ=255)
                                                                tGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGccc                                     >  1:1358359/1‑100 (MQ=255)
                                                                   aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGccagat                                  >  1:1640209/1‑96 (MQ=255)
                                                                   aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgc                                  >  1:422240/1‑100 (MQ=255)
                                                                   aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgc                                  >  1:689303/1‑100 (MQ=255)
                                                                   aGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGACTGCGCCCAg                                   >  1:657730/1‑99 (MQ=255)
                                                                    ggCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcg                                 >  2:1913444/1‑100 (MQ=255)
                                                                     GCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgt                                <  1:2423400‑M1/100‑1 (MQ=255)
                                                                     GCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgt                                <  2:2318504‑M1/100‑1 (MQ=255)
                                                                      CCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtg                               <  2:1263775‑M1/100‑1 (MQ=255)
                                                                      CCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtg                               <  2:2374989‑M1/100‑1 (MQ=255)
                                                                        GGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtgcg                             >  1:945083‑M1/1‑100 (MQ=255)
                                                                         GATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAgcgtgcgt                            >  2:2134996‑M1/1‑100 (MQ=255)
                                                                             aGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCt                        >  1:29853/1‑100 (MQ=255)
                                                                              ggCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                       >  2:2540324/1‑100 (MQ=255)
                                                                              ggCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                       >  2:868639/1‑100 (MQ=255)
                                                                              ggCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCtt                       <  2:128836/100‑1 (MQ=255)
                                                                               gCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTg                      >  2:126751/1‑100 (MQ=255)
                                                                               gCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTg                      <  2:1983888/100‑1 (MQ=255)
                                                                               gCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTg                      <  2:549625/100‑1 (MQ=255)
                                                                               gCGTACGCGCCGCAGCCGGCATTTTACGCATTCCTTCGCAATACGCGTGTACTTGATACGCTTCGGCTCCAGCTCGTCTGCGCCCAGCGTGCGTTTCTTg                      <  2:2183167/100‑1 (MQ=255)
                                                                                cGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGt                     >  1:1627032/1‑100 (MQ=255)
                                                                                cGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGt                     <  1:905085/100‑1 (MQ=255)
                                                                                cGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGt                     <  2:569680/100‑1 (MQ=255)
                                                                                 gTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTa                    <  1:299457/100‑1 (MQ=255)
                                                                                  ttCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTAc                   <  2:2684882/100‑1 (MQ=255)
                                                                                  ttCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCAGCTCCAGCGCGTCTGCGCCCAGCGAGCGTTTCTTGTAc                   <  2:1694758/100‑1 (MQ=255)
                                                                                    cgcgCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTActc                 >  2:1169361/1‑100 (MQ=255)
                                                                                     gcgcCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTActct                >  2:1537668/1‑100 (MQ=255)
                                                                                      cgccgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCtt               >  1:2192662/1‑100 (MQ=255)
                                                                                       gccgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTc              >  1:1745421/1‑100 (MQ=255)
                                                                                        ccgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCg             <  1:168166/100‑1 (MQ=255)
                                                                                        ccgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCg             <  1:1169366/100‑1 (MQ=255)
                                                                                        ccgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCg             >  1:1420180/1‑100 (MQ=255)
                                                                                         cgcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGt            <  1:1111928/100‑1 (MQ=255)
                                                                                          gcATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTa           <  1:1069555/100‑1 (MQ=255)
                                                                                            atccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACt         <  1:549858‑M2/93‑1 (MQ=255)
                                                                                             tccggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTc        <  2:104416‑M2/94‑1 (MQ=255)
                                                                                               cggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCgg      >  1:1768130‑M2/5‑100 (MQ=255)
                                                                                               cggcATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGATTGCGCCCAGCGTGCGTTTCTTGTAATCTTCGTACTCgg      >  2:2597902‑M2/5‑100 (MQ=255)
                                                                                                   aTTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTaaa  >  1:828923/1‑100 (MQ=255)
                                                                                                   aTTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTaa   >  2:2680911/1‑99 (MQ=255)
                                                                                                   |                                                                                                   
TGATGCGACGCTTACCGCGTCTTATCAGGCCTACAGTTTTACAACGTATTGAAATTGCTGGTTTTGTAGGCCGGATAAGGCGTTCGCGCCGCATCCGGCATTTTACGCATTACTTCGCAATACGCTTGTACTTGATACGCTTCGGCTCCAGCGCGTCTGCGCCCAGCGTGCGTTTCTTGTACTCTTCGTACTCGGTAAA  >  NC_000913/4628746‑4628944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.