Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,390,012 Δ1 bp 16.3% intergenic (+48/+36) yfbP → / ← nuoN TPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,390,0120G.16.3% 528.6 / 106.7 178intergenic (+48/+36)yfbP/nuoNTPR‑like repeats‑containing protein/NADH:ubiquinone oxidoreductase, membrane subunit N
Reads supporting (aligned to +/- strand):  ref base G (59/90);  new base . (13/16);  total (72/106)
Fisher's exact test for biased strand distribution p-value = 6.80e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.31e-02

Only 100 of 182 total aligned reads displayed.

AGGCAGTTATGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATACACCCAGCACC  >  NC_000913/2389914‑2390111
                                                                                                  |                                                                                                      
aGGCAGTTATGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGc                                                                                                       >  1:407785/1‑100 (MQ=255)
aGGCAGTTATGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGc                                                                                                       <  2:3391991/100‑1 (MQ=255)
 ggCAGTTATGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCa                                                                                                      <  1:1039687/100‑1 (MQ=255)
 ggCAGTTATGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCa                                                                                                      >  2:918877/1‑100 (MQ=255)
  gCAGTTATGTTTAGAGTATTTTGTCGATAGTCGTACACAGTTCACGTAACGCTCTGCGTCTATCTACTACCCCTTCTTTTTCAGAAAACCCGCCGAGCAt                                                                                                     <  2:1432286/100‑1 (MQ=255)
   cAGTTATGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATg                                                                                                    <  2:51845/100‑1 (MQ=255)
    aGTTATGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGt                                                                                                  <  2:1752119/100‑1 (MQ=255)
    aGTTATGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGt                                                                                                  >  1:140865/1‑100 (MQ=255)
     gTTATGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTc                                                                                                 <  1:2143041/100‑1 (MQ=255)
      ttATGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTcg                                                                                                <  1:2656516/100‑1 (MQ=255)
         tGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTcggcg                                                                                             <  1:1679976/100‑1 (MQ=255)
         tGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTcggcg                                                                                             >  1:2687177/1‑100 (MQ=255)
          gTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTcggcgg                                                                                            >  2:1187156/1‑100 (MQ=255)
          gTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTcggcgg                                                                                            <  2:1298261/100‑1 (MQ=255)
          gTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTcggcgg                                                                                            >  1:58766/1‑100 (MQ=255)
          gTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTACAAAAAAAAAAAAACCGCCGAGCATGTcggcg                                                                                             <  1:2944131/99‑1 (MQ=255)
           tttAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTcggc                                                                                              >  1:2523107/1‑97 (MQ=255)
           tttAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCggcggc                                                                                          <  2:210895/100‑1 (MQ=255)
           tttAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGACATGCTcggcggt                                                                                           >  1:2778278/1‑99 (MQ=255)
             tAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAGCCGCCGACATGCTCGGCGGtttt                                                                                      >  1:2592304/1‑100 (MQ=37)
              atcttATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCttt                                                                                      <  1:3278517/96‑1 (MQ=255)
              agagTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGACATGCTCGGCGGtttt                                                                                      <  2:2778301/100‑1 (MQ=255)
              agagTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACGATCCCTTCTTTTTCAGAAAAACCGCCGACATGCTCGGCGGtttt                                                                                      <  2:370688/100‑1 (MQ=255)
                 gTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTg                                                                                   <  1:575879/100‑1 (MQ=255)
                 gTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTg                                                                                   <  2:619976/100‑1 (MQ=255)
                 gTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGACATGCTCGGCGGtttttct                                                                                   <  1:844752/100‑4 (MQ=38)
                  tATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGACATGCTCGGCGGtttttctg                                                                                  <  2:2382147/100‑5 (MQ=38)
                   aTTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGAc                                                                                 <  2:2006305/100‑1 (MQ=255)
                    ttttGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACt                                                                                <  1:3073083/100‑1 (MQ=255)
                    ttttGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAGCCGCCGACATGCTCGGCGGtttttctgaaa                                                                               <  2:3403868/100‑8 (MQ=21)
                     tttGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAGCCGCCGACATGCTCGGCGGtttttctgaaaa                                                                              <  1:818564/100‑9 (MQ=18)
                       tGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAGCCGCCGACATGCTCGGCGGtttttctgaaaaag                                                                            <  2:1950158/100‑11 (MQ=18)
                        ggCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACa                                                                            >  2:3272113/1‑100 (MQ=255)
                          cGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACaaa                                                                          >  2:3869757/1‑100 (MQ=255)
                           gATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAg                                                                         <  2:329976/100‑1 (MQ=255)
                            aTAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGt                                                                        <  2:2224136/100‑1 (MQ=255)
                            aTAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGt                                                                        <  1:2494966/100‑1 (MQ=255)
                               gTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAAc                                                                     >  2:2853516/1‑100 (MQ=255)
                                tCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTTATTTTATCCGCCGAGTATGTCGGCGGCTTTCTGACTTACAAAATAACa                                                                    >  1:3027005/1‑100 (MQ=255)
                                 cGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAg                                                                   <  2:1952451/100‑1 (MQ=255)
                                 cGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAg                                                                   <  1:1775399/100‑1 (MQ=255)
                                 cGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAg                                                                   >  1:2287232/1‑100 (MQ=255)
                                    acacAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGAtt                                                                <  1:3868049/100‑1 (MQ=255)
                                     cacaGTTCACTTAACGCTCTGCGTCTATCTACTAGCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCTGCGGCTTTCTGACTTACTAAGTAACAGATTa                                                               <  2:2614061/100‑1 (MQ=255)
                                       caGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACa                                                             <  2:1769414/100‑1 (MQ=255)
                                       caGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACa                                                             >  1:1500586/1‑100 (MQ=255)
                                        aGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACAt                                                            >  2:2425261/1‑100 (MQ=255)
                                         gTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATc                                                           >  1:3729073/1‑100 (MQ=255)
                                         gTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATc                                                           <  2:2137093/100‑1 (MQ=255)
                                          ttCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCa                                                          >  1:3061865/1‑100 (MQ=255)
                                            cACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGc                                                        >  2:136407/1‑100 (MQ=255)
                                            cACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGc                                                        <  2:55047/100‑1 (MQ=255)
                                            cACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTCTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGc                                                        >  1:2069997/1‑100 (MQ=255)
                                             aCTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCg                                                       >  1:3665521/1‑100 (MQ=255)
                                             aCTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCg                                                       <  2:140725/100‑1 (MQ=255)
                                             aCTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCg                                                       >  2:3833808/1‑100 (MQ=255)
                                                   cGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTg                                                 <  1:2485560/100‑1 (MQ=255)
                                                      tctGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCa                                              >  1:530118/1‑100 (MQ=255)
                                                      tctGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGAATTACAAACTAACAGAATACATCAGCGGCATTGCCa                                              >  1:1085556/1‑100 (MQ=255)
                                                        tGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCaaa                                            <  2:1494488/100‑1 (MQ=255)
                                                               atctaCTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACaa                                     >  2:1660484/1‑100 (MQ=255)
                                                                tctaCTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAAt                                    <  2:352355/100‑1 (MQ=255)
                                                                tctaCTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAAt                                    <  2:3569443/100‑1 (MQ=255)
                                                                 ctactaTCCCTTCTTTTTCATTTTATCTTCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATg                                   >  1:1188516/1‑100 (MQ=255)
                                                                 ctactaTCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATg                                   >  2:1008503/1‑100 (MQ=255)
                                                                 ctactaTCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATg                                   >  2:3022391/1‑100 (MQ=255)
                                                                  tactaTCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGc                                  <  2:407788/100‑1 (MQ=255)
                                                                  tactaTCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGc                                  <  1:1483374/100‑1 (MQ=255)
                                                                  tactaTCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGc                                  <  2:2365747/100‑1 (MQ=255)
                                                                   actaTCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGTGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCt                                 <  1:987151/100‑1 (MQ=255)
                                                                   actaTCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGTGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCt                                 <  1:2985807/100‑1 (MQ=255)
                                                                   actaTCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCt                                 <  2:3342364/100‑1 (MQ=255)
                                                                      aTCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAAt                              <  2:3286307/100‑1 (MQ=255)
                                                                          cttcttTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGc                          >  2:663890/1‑100 (MQ=255)
                                                                           ttcttTTTCAGAAAAACTGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCg                         <  1:89374/100‑1 (MQ=255)
                                                                               ttttCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTtg                     >  2:3164206/1‑100 (MQ=255)
                                                                                tttCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTtgt                    >  1:1348732/1‑100 (MQ=255)
                                                                                 agtcagaaagccgccgACATGCTCGGCGGTTTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTtgt                    >  1:1421651/11‑100 (MQ=21)
                                                                                 agtcagaaagCCGCCGACATGCTCGGCGGTTTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTtgt                    >  2:1144159/7‑100 (MQ=21)
                                                                                  tCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTgg                  <  2:1312256/100‑1 (MQ=255)
                                                                                   cAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGc                 >  2:3684858/1‑100 (MQ=255)
                                                                                   cAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGc                 >  2:1506295/1‑100 (MQ=255)
                                                                                    cagaaagccgccgACATGCTCGGCGGTTTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGc                 >  2:98527/8‑100 (MQ=25)
                                                                                    cagaaagccgccgACATGCTCGGCGGTTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGcc                >  2:191023/8‑100 (MQ=37)
                                                                                    aGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGc                 <  1:749211/99‑1 (MQ=255)
                                                                                       aaaaCCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATa             >  2:3595561/1‑100 (MQ=255)
                                                                                       aaaaCCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATa             >  1:2015718/1‑100 (MQ=255)
                                                                                        aagccgccgACATGCTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGGTTTGGCCAt              >  1:735366/4‑98 (MQ=255)
                                                                                          gccgccgACATGCTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATacac          >  2:1281569/2‑100 (MQ=255)
                                                                                          aCCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATacac          >  2:3473970/1‑100 (MQ=255)
                                                                                            cgccgAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATACAccc        <  1:2853493/100‑1 (MQ=255)
                                                                                              ccgAGCATGTCGGCGGCTTTCTGACTTACCAAGTAACAGATTACATCAGCGGCATTGCCAATCGCACAATGCTAATCAGCGGTTGTGGCCATACACCCAg      <  1:2386712/100‑1 (MQ=255)
                                                                                               cgAGCATGTCGGCGGCTTTCTGACTCATAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATACACCCAGc     >  1:1435002/1‑100 (MQ=255)
                                                                                                gAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATACACCCAGCa    <  2:3457660/100‑1 (MQ=255)
                                                                                                 aGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATACACCCAGCAc   <  1:3536483/100‑1 (MQ=255)
                                                                                                 aGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATACACCCAGCAc   <  1:3799021/100‑1 (MQ=255)
                                                                                                 aGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATACACCCAGCAc   <  2:804071/100‑1 (MQ=255)
                                                                                                  gCATGTCGGCGTCTGGCTGACTTAAATGGGGAGGGATTACGTCAGCGGCAGGGCCAAACGCACAATGCTAATCAGCGGGTGTGGCGATACACCCAGCAcc  <  1:3115577/100‑1 (MQ=255)
                                                                                                  gCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATACACCCAGCAcc  <  2:2753929/100‑1 (MQ=255)
                                                                                                  gCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATACACCCAGCAcc  >  2:3421716/1‑100 (MQ=255)
                                                                                                  |                                                                                                      
AGGCAGTTATGTTTAGAGTATTTTGGCGATAGTCGTACACAGTTCACTTAACGCTCTGCGTCTATCTACTATCCCTTCTTTTTCAGAAAAACCGCCGAGCATGTCGGCGGCTTTCTGACTTACAAAGTAACAGATTACATCAGCGGCATTGCCAAACGCACAATGCTAATCAGCGGTTGTGGCCATACACCCAGCACC  >  NC_000913/2389914‑2390111

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: