| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 225755 | 127 (0.910) | 23 (0.170) | 6/170 | NT | 17.2% | intergenic (+180/‑4) | alaV/rrlH | tRNA‑Ala/23S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 2729217 = | 100 (0.750) | intergenic (‑33/+152) | rrlG/gltW | 23S ribosomal RNA of rrnG operon/tRNA‑Glu | |||||
CTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/225653‑225755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTA > NC_000913/2729217‑2729315 CTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGG > 2:2872121/1‑100CTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGG < 1:2316527/100‑1 GGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTT < 1:3689820/100‑1 GATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTG < 2:2239277/100‑1 ATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTG < 1:1751323/99‑1 CTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAA > 1:3554156/1‑100 TCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTT > 1:2849637/1‑100 TCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGCTAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTT > 1:2202181/1‑100 TCAAATTTTCGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTT > 1:393374/1‑100 AATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCA > 1:600216/1‑100 AATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTACAATTTTCA > 1:2967299/1‑100 tcCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTT > 2:1513249/3‑100 TTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTT > 2:1602316/1‑100 CGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGA > 2:2921851/1‑100 CGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGA > 2:2760903/1‑100 CGCAACACGATGATGAATCGTAAGAAACATCTTCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGA > 2:1034024/1‑100 CGCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGTGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGA > 2:690802/1‑100 CGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTCTCGTTGTTCAGTGTTTCAATTTTCAGCT > 1:1169075/1‑97 GCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGAT > 1:1090449/1‑100 GCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGAT > 2:553256/1‑100 GCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGAT > 1:129631/1‑100 GCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTGCGAAAATTGGAGAGACTCACGAACAACTTTCATGGTTCAGTGTTGCAATGTTCAGCTT > 2:175739/1‑97 GCAACACGATGATGAATCGTAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGAT > 2:3433598/1‑100 GCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGAT > 2:2158663/1‑100 GCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTAAGCTT > 1:1555448/1‑97 CAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATC > 1:1411430/1‑100 ACACGATGATGGATCGCAAGAAACATCTTCGTGTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCA > 2:3210895/1‑100 ACACGATGATGAATCGAAAGAAACATCTTCGGGTTGCGTAAATTTGAGAGACTCACGAACAACTTTCGTTGTTCAGTGTTTCAATTTTCAGCTTGATCCA > 1:2379500/1‑100 GTTGCTAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGAC < 1:927488/100‑1 GTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGAC > 1:1925669/1‑100 GTTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGAC > 1:1926112/1‑100 TTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACT > 1:929896/1‑100 TTGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGACCCAGATTTTTAAAGAGCAAATATATCAAACAAGACT < 2:1597261/100‑1 TGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTT > 1:3754674/1‑100 TGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACT < 1:2700647/99‑1 TGCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAACTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTT > 1:294218/1‑100 GCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTA > 2:3650551/1‑100 GCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTA > 2:3881179/1‑100 CTGGATCAAGCTGAAAATTGAAACACTGAACAATGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGGATCGCAAGAAACATCTTCGGGTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/225653‑225755‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttgCGAAAATTTGAGAGACTCACGAACAACTTTCATTGTTCAGTGTTTCAATTTTCAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTA > NC_000913/2729217‑2729315 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |