| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3546222 = | NA (NA) | 13 (0.100) | 8/166 | NT | NA | noncoding (1/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3546254 = | NA (NA) | noncoding (33/36 nt) | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3546324‑3546222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggcCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT > NC_000913/3546254‑3546352 TATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCG < 2:801363/100‑1TATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCG < 2:791843/100‑1TATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCG < 2:3414579/100‑1TATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCG < 1:1853404/100‑1 ATCGCGGTGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGG < 1:1409332/100‑1 ATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGG < 2:658275/100‑1 ATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACATAGGCCCGAAATGACGCTTTAGCGTCGCATCGG > 2:136972/1‑100 TCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGG < 1:281716/100‑1 TCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGG < 2:2581912/100‑1 TCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGG < 2:3575961/100‑1 TCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGG < 2:3731648/100‑1 CGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC > 2:1345244/1‑100 CAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTT > 2:771781/1‑100 ACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTC > 2:3181047/1‑100 ACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTC < 1:771775/100‑1 CGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCC > 2:760185/1‑100 GTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCC > 1:1934456/1‑100 GTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCC > 1:2840982/1‑100 AGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCG > 2:3771926/1‑100 AGGCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCG > 1:146079/1‑100 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG > 2:1608310/1‑100 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG > 2:109935/1‑100 GCCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG > 1:1476721/1‑100 GCCCGAAATGACGCTTTAGCGTCACATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCG > 2:1428789/1‑100 CCCGAAATGACGCTTTAGCGTCGCATCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGA > 1:1924672/1‑100 CGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTA < 1:2573599/100‑1 GGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAA < 1:801357/100‑1 GGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAA < 1:3367088/100‑1 GGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAA < 1:2254283/100‑1 GCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAAT < 2:2328473/100‑1 CCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT > 1:3721289/1‑100 CCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT > 1:1034080/1‑100 TATCGCGGGGAAACGAACCGAGGATTTGACAAAGCAATGCTGCGCCAACGTCTGGCACATGTTCAACGTAGGCCCGAAATGACGCTTTAGCGTCGCATCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3546324‑3546222‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgggcCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGCGATAATATGACCAACCTCTCATAATTTAAATT > NC_000913/3546254‑3546352 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |