New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3898629 =	NA (NA)	14 (0.110)	8/162	NT	NA	intergenic (+20/+42)	cbrC/yieK	UPF0167 family protein/putative 6‑phosphogluconolactonase
	?	NC_000913	3898659 =	NA (NA)					intergenic (+50/+12)	cbrC/yieK	UPF0167 family protein/putative 6‑phosphogluconolactonase

AGCTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3898735‑3898629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcctTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACAT  >  NC_000913/3898659‑3898756                                                                                                                                                                                                               AGCTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCT                                                                                                           <  1:764605/100‑1  GCTGCATCCTTCGCTGATGGTAATCGCTGGTAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTC                                                                                                          <  2:2054874/100‑1  GCTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTC                                                                                                          >  2:2051321/1‑100   CTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGCATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCC                                                                                                         >  2:3350465/1‑100    TGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCG                                                                                                        >  1:1460989/1‑100    TGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCG                                                                                                        >  2:3846428/1‑100     GCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGG                                                                                                       <  2:270857/100‑1     GCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGG                                                                                                       <  2:3822259/100‑1      CATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGATTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGC                                                                                                      <  2:2269359/100‑1       ATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                                     >  2:1457039/1‑100       ATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                                     <  2:2275520/100‑1       ATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                                     <  2:75107/100‑1                                                                   CTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACAGAGTGCTAATTCTGCGGCATCGGCTTTATCAGCGATTACCA                                         >  1:3529875/1‑100                                                                    TTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCAT                                        >  1:857448/1‑100                                                                       AGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACAGAGTGCTCATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAG                                     >  1:3630411/1‑100                                                                         AAATAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATGTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCG                                   >  1:2397479/1‑100                                                                            TAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAG                                >  1:3639539/1‑100                                                                              AGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAAGCGAGTGCTAATTCTGCGGCAGCGCCTTTATGACCGATTACCATCAGCGTAGGA                              >  1:3869258/1‑100                                                                              AGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGA                              >  2:803602/1‑100                                                                              AGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGA                              >  2:377503/1‑100                                                                              AGGCCGGATGTGTGAATTACGCTCCGGCCTTATATCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGA                              >  1:2565971/1‑100                                                                               GGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAT                             >  2:3218538/1‑100                                                                                GCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATG                            >  2:138039/1‑100                                                                                GCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATG                            >  2:3480792/1‑100                                                                                GCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATG                            >  2:2817941/1‑100                                                                                GCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAT                             >  1:3553482/1‑99                                                                                                    TCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTG        >  2:166202/1‑100                                                                                                    TCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTACAACACGGAAGCTG        <  2:3412500/100‑1                                                                                                     CCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGG       <  2:3400784/100‑1                                                                                                     CCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTACAACACGGAAGCTGa       >  1:3412472/1‑99                                                                                                      CGGCCTTATTTCTTAAGCTTAGCCTAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATTAGCGAAGGATGCAGCTGCAACACGGAAGCT         <  1:3447963/97‑1                                                                                                      CGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA      <  2:1826675/100‑1                                                                                                      CGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA      <  2:3073026/100‑1                                                                                                      CGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA      <  2:279323/100‑1                                                                                                      CGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA      >  1:725661/1‑100                                                                                                      CGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGAGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA      <  2:2662399/100‑1                                                                                                       GGCCTTATTTCTTAAGCTTAACCGAGTGCTACTTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA     >  1:1852846/1‑100                                                                                                       GGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA     <  2:2359553/100‑1                                                                                                       GGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA     <  1:912191/100‑1                                                                                                        GCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAAC    <  1:991254/100‑1                                                                                                          CTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACAT  >  2:1314180/1‑100                                                                                                          CTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACAT  >  1:3408300/1‑100                                                                                                                                                                                                               AGCTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3898735‑3898629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcctTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACAT  >  NC_000913/3898659‑3898756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.