New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4531892 =	140 (1.000)	18 (0.140)	10/160	NT	13.4%	intergenic (‑241/+158)	sgcX/yjhY	putative endoglucanase with Zn‑dependent exopeptidase domain/pseudogene, zinc finger protein family
	?	NC_000913	4531924 =	107 (0.850)					intergenic (‑273/+126)	sgcX/yjhY	putative endoglucanase with Zn‑dependent exopeptidase domain/pseudogene, zinc finger protein family
Rejected: Frequency below cutoff threshold.

TTATGCTGGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4531999‑4531892 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcctgcaCGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGATCTCCT  >  NC_000913/4531924‑4532022                                                                                                                                                                                                                 TTATGCTGGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGC                                                                                                             >  2:1440370/1‑100  TATGCTGGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCG                                                                                                            >  2:290470/1‑100    TGCTGGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTC                                                                                                          >  2:1532062/1‑100     aCTGGGAACCAACGACCTTCCACGCGTCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCC                                                                                                         >  1:33405/2‑100     GCTGGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCC                                                                                                         <  1:1098433/100‑1     GCTGGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCC                                                                                                         <  2:459946/100‑1      CTGGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCCT                                                                                                        <  2:10929/100‑1      CTGGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCCT                                                                                                        <  2:3420327/100‑1       TGGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCGGGTGTATCCGCGTGCAGGACGTAATGAAGAGGGAGCGTCCTG                                                                                                       >  1:2718996/1‑100        GGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCCTGC                                                                                                      <  1:2238806/100‑1        GGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCCTGC                                                                                                      <  2:2601539/100‑1        GGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCCTGC                                                                                                      <  2:1375158/100‑1         GGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCCTGC                                                                                                      <  1:2832389/99‑1          GAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCCTGC                                                                                                      <  1:2662706/98‑1                                               TCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAA                                                               >  1:2349886/1‑100                                                               CTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCGTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGG                                                >  2:2507360/1‑99                                                                       TCCACGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTT                                       >  2:2510837/1‑100                                                                         CACGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAAGGTAATGGCGCGTGGCAGGTCGTTGG                                     >  1:3100930/1‑100                                                                          ACGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGT                                    >  2:660692/1‑100                                                                           CGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCCGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTT                                   >  1:1492974/1‑100                                                                           CGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTT                                   >  2:1983424/1‑100                                                                           CGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTT                                   >  2:903919/1‑100                                                                           CGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTT                                   >  1:1488772/1‑100                                                                           CGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTT                                   >  1:2724772/1‑100                                                                           CGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTT                                   >  1:629558/1‑100                                                                           CGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGGGGCAGGTCGTTGGTT                                   >  2:1957774/1‑100                                                                            GTGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTC                                  >  1:620989/1‑100                                                                             TGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCCGCGGATCTTAGAATGTCATGGCGCGTGGCAGGTCGTTGGTTCC                                 >  1:3017818/1‑100                                                                             TGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCC                                 >  1:3363113/1‑100                                                                             TGCAGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTC                                  >  1:2995471/1‑99                                                                                AGGACGTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAG                              <  2:620992/100‑1                                                                                     GTAATGAAGAGGGAGCGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAA                         <  2:2349901/100‑1                                                                                                    CGTCCTGCACTTGGATACCCCAGCATCTCCATCAGCGTATCTTAGAATGGAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAAGGTAAGAAAACA             <  1:290595/97‑1                                                                                                    CGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCCGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCG          <  2:2733223/100‑1                                                                                                    CGTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCG          <  1:3833950/100‑1                                                                                                     GTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGG         <  2:1246860/100‑1                                                                                                     GTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGG         <  2:3616739/100‑1                                                                                                     GTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGG         <  2:2503956/100‑1                                                                                                     GTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGG         >  1:847545/1‑100                                                                                                     GTCCTGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAAGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGG         >  2:2720311/1‑100                                                                                                         TGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGATCT     >  2:1013532/1‑100                                                                                                         TGCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGAT       >  2:1488243/1‑98                                                                                                          GCACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGATCTC    >  2:2914097/1‑100                                                                                                           CACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGATCTCC   <  2:2904764/100‑1                                                                                                           CACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGATCTCC   <  1:693171/100‑1                                                                                                            ACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCACAGCATAATGTAAGAAAACATCGGATCTCCT  <  1:1732414/100‑1                                                                                                            ACGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGACAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGATCTCCT  >  2:1175560/1‑100                                                                                                            ACGTGGATACCCCAGCATCTCCATCAGCAGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGATCTCCT  <  2:751079/100‑1                                                                                                                                                                                                                 TTATGCTGGGAACCAACGACCTGCCACGCGCCATTACATTCTAAGATCCGCTGATGGAGATGCTGGGGTATCCACGTGCAGGACGTAATGAAGAGGGAGCGTCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4531999‑4531892 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcctgcaCGTGGATACCCCAGCATCTCCATCAGCGGATCTTAGAATGTAATGGCGCGTGGCAGGTCGTTGGTTCCCAGCATAATGTAAGAAAACATCGGATCTCCT  >  NC_000913/4531924‑4532022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.