New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4534139146 (1.040)15 (0.120) 9/158 NT 10.2% intergenic (‑86/+291) yjhX/yjhZ UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
?NC_000913 = 4534160 135 (1.090)intergenic (‑107/+270) yjhX/yjhZ UPF0386 family protein/pseudogene, rimK paralog, C‑terminal fragment
Rejected: Frequency below cutoff threshold.

TTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4534033‑4534139
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataatcagtTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGT  <  NC_000913/4534160‑4534062
                                                                                                                                                                                                              
TTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGAT                                                                                                            >  2:3715898/1‑100
 TCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATA                                                                                                           <  2:3301765/100‑1
 TCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCAGCATTCGATTTCGGCGCATTGATA                                                                                                           >  1:3293818/1‑100
  CCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAA                                                                                                          <  2:657980/100‑1
  CCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAA                                                                                                          >  1:1869394/1‑100
  CCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAA                                                                                                          >  1:1927599/1‑100
  CCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAA                                                                                                          >  1:2605913/1‑100
  CCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAA                                                                                                          >  2:1524140/1‑100
  CCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTAATAA                                                                                                          >  1:1310545/1‑100
   CTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                         >  2:2968660/1‑100
   CTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                         >  1:3356120/1‑100
   CTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                         >  1:3155602/1‑100
   CTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAAT                                                                                                         >  1:2088675/1‑100
    TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                        <  2:913641/100‑1
    TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                        >  2:2713243/1‑100
    TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                        >  1:1152318/1‑100
    TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                        <  2:1253444/100‑1
    TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                        >  1:616421/1‑100
    TGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATC                                                                                                        >  2:383918/1‑100
     GACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                       >  2:1568450/1‑100
     GACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                       >  2:3769675/1‑100
     GACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                       >  1:1234193/1‑100
     GACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCA                                                                                                       >  1:2497730/1‑100
       CGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGT                                                                                                     >  1:232431/1‑100
                      CTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGT‑‑‑CCGACCTTTTCAGGC                                                                                   <  2:2337389/100‑1
                                  TTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGAT                                                                          >  1:1635681/1‑100
                                     AATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTAT                                                                       <  1:2331662/100‑1
                                      ATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATC                                                                      <  2:1549465/100‑1
                                      ATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATC                                                                      <  2:2966220/100‑1
                                      ATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATC                                                                      <  2:2425771/100‑1
                                      ATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATC                                                                      <  2:2331071/100‑1
                                      ATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATC                                                                      <  2:1139763/100‑1
                                      ATCATCATGTGCAAAACGTGCAAACACACCGCGGTGGCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATC                                                                      <  1:519984/100‑1
                                        CATCATGTGCAAAACGTGCAAACACACCTCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAA                                                                    <  2:1406565/100‑1
                                            ATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCG                                                                <  1:2217231/100‑1
                                             TGTGGAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATC                                                                      <  1:1466048/93‑1
                                             TGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGC                                                               <  2:2515158/100‑1
                                              GTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCC                                                              <  1:245854/100‑1
                                                    AACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATC                                                        <  2:1635690/100‑1
                                                                                              ATTGATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGCCTCCGCGGTGTGTTTGCACGTTTTGCACATGAT              >  1:2202406/1‑100
                                                                                                 GATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGAT           <  1:1808634/100‑1
                                                                                                  ATAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATT          <  1:1933819/100‑1
                                                                                                   TAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTA         <  2:2389535/100‑1
                                                                                                   TAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTA         >  2:3650090/1‑100
                                                                                                   TAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTA         <  2:2158805/100‑1
                                                                                                   TAATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTA         >  2:1082057/1‑100
                                                                                                    AATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAA        <  2:3372959/100‑1
                                                                                                     ATCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAA       >  2:1710257/1‑100
                                                                                                      ctAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAAT      <  2:3248391/98‑1
                                                                                                      TCAGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAAT      <  2:358482/100‑1
                                                                                                        AGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAG    >  1:3248365/1‑100
                                                                                                        AGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAG    >  1:1941613/1‑100
                                                                                                        AGTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAG    >  2:1368687/1‑100
                                                                                                         GTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGG   <  1:2217405/100‑1
                                                                                                         GTTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGG   >  1:3546853/1‑100
                                                                                                          TTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGT  >  2:3297202/1‑100
                                                                                                          TTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGT  <  2:3592263/100‑1
                                                                                                          TTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGT  >  2:3752209/1‑100
                                                                                                          TTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGT  <  2:1309654/100‑1
                                                                                                                                                                                                              
TTCCTGACGGGATAAATTCATACTGAAGAACCTATTTAATCATCATGTGCAAAACGTGCAAACACACCGCGGTGTCCGCATTCGATTTCGGCGCATTGATAATCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4534033‑4534139
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gataatcagtTCCCCGACCTTTTCAGGCCGGACTGATTATCAATGCGCCGAAATCGAATGCGGACACCGCGGTGTGTTTGCACGTTTTGCACATGATGATTAAATAGGT  <  NC_000913/4534160‑4534062

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.