New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 213635NA (NA)10 (0.080) 7/164 NT NA noncoding (4/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 213668 NA (NA)noncoding (37/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 217 total aligned reads displayed.

GCTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTT  >  NC_000913/213536‑213734
                                                                                                   |                                                                                                   
 cTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGATGTTGTGGCTTAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAATACGCTTAGTTAAGTGaaat                                                                                                    <  1:949146/100‑2 (MQ=255)
 cTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTACGTGAAAg                                                                                                    >  1:3806180‑M1/1‑99 (MQ=255)
 cTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAg                                                                                                    >  2:2790374‑M1/1‑99 (MQ=255)
 cTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAg                                                                                                    <  2:1359202‑M1/100‑2 (MQ=255)
   gATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgcc                                                                                                  >  2:339949‑M1/1‑97 (MQ=255)
   gATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgcc                                                                                                  >  2:3233823‑M1/1‑97 (MQ=255)
    aTTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAGAgccg                                                                                                 <  1:1782948‑M1/100‑5 (MQ=255)
     ttGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccgg                                                                                                <  2:2246543‑M1/100‑6 (MQ=255)
       gcggcgGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggat                                                                                              <  2:3562124‑M1/100‑8 (MQ=255)
        cggcggCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATa                                                                                             >  1:679677/1‑100 (MQ=255)
        cggcggCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATa                                                                                             >  2:299762/1‑100 (MQ=255)
        cggcggCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATa                                                                                             <  2:1468059/100‑1 (MQ=255)
          gcggcAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAg                                                                                           >  2:2510545/1‑100 (MQ=255)
             gcAGGGGTATTTGGGACGCAAGAAGGTGTGGCTGAAGGTGAGAAGGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACg                                                                                        <  1:644371/100‑1 (MQ=255)
              cAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGc                                                                                       <  1:3467329/100‑1 (MQ=255)
                ggggTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCAt                                                                                     <  2:2652395/100‑1 (MQ=255)
                ggggTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCAt                                                                                     >  2:365403/1‑100 (MQ=255)
                 gggTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAGCACGCGTAGTTAAGTGAAAGCCGGATAAGACGCATc                                                                                    <  1:1524484/100‑1 (MQ=255)
                 gggTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATc                                                                                    >  1:1930733/1‑100 (MQ=255)
                 gggTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATc                                                                                    <  1:1247282/100‑1 (MQ=255)
                 gggTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATc                                                                                    <  2:3602982/100‑1 (MQ=255)
                  ggTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCa                                                                                   >  1:2341401/1‑100 (MQ=255)
                   gTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCaa                                                                                  >  2:3377527/1‑100 (MQ=255)
                     aTTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAAc                                                                                <  1:557329/100‑1 (MQ=255)
                        tgtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTc                                                                             >  1:1056115/1‑100 (MQ=255)
                        tgtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTc                                                                             <  1:1026051/100‑1 (MQ=255)
                        tgtgACGCAAGAAGGGGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTc                                                                             <  2:3196782/100‑1 (MQ=255)
                         gtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCg                                                                            <  2:3483172/100‑1 (MQ=255)
                         gtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCg                                                                            <  2:1100609/100‑1 (MQ=255)
                         gtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCg                                                                            <  2:2612717/100‑1 (MQ=255)
                         gtgACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCg                                                                            <  1:3233798/100‑1 (MQ=255)
                          tgACGCAAGAAGGTGTGGCTGACGGTGAGAATGGCGTAAGTCTTGTCTGGCCGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGgcgc                                                                           >  1:3341187/1‑100 (MQ=255)
                           gACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCA                                                                          <  2:2588336‑M2/100‑1 (MQ=255)
                           gACGCAAGAAGGTGTGGCTGAAGGTGAGAAGGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCg                                                                            <  1:3397503/98‑1 (MQ=255)
                                   aagGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggctt                                                                  <  2:1082992‑M1/100‑36 (MQ=255)
                                    agGTGTGGCTGAAGGTGCGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGaa                                                                 >  1:299364/1‑100 (MQ=255)
                                    agGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggct                                                                   <  1:1448655‑M1/98‑35 (MQ=255)
                                    agGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGaa                                                                 >  1:3687565/1‑100 (MQ=255)
                                      gtgtGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAg                                                               <  2:1967898/100‑1 (MQ=255)
                                       tgtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggcagatcg                                                              >  1:2629623‑M1/1‑61 (MQ=255)
                                       tgtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGt                                                              <  2:2961343/100‑1 (MQ=255)
                                        gtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAgccggatgcgacgtttgatgcgtcttatccggctttcact                                                             <  2:1502503‑M1/100‑41 (MQ=255)
                                          ggCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCaa                                                           >  1:1993878/1‑100 (MQ=255)
                                          ggCGGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCaa                                                           >  1:2310400/1‑100 (MQ=255)
                                           gCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAAt                                                          >  2:3740652/1‑100 (MQ=255)
                                              gAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAg                                                       <  1:1449295/100‑1 (MQ=255)
                                                   tGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTc                                                  <  2:1162110/100‑1 (MQ=255)
                                                    gagaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCg                                                 >  1:156762/1‑100 (MQ=255)
                                                     agaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGc                                                >  2:805132/1‑100 (MQ=255)
                                                      gcaTGGCGTAAGCTTAGGCTGCCAGAAAACGCGTAGAGAAGGGAAAGCCGGATAAGACGCAAGAAACGTCGCATCCGGAGAAAGTCAATCAGGATTCGCt                                               <  1:3445504/98‑1 (MQ=255)
                                                      gaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCt                                               >  2:1350224/1‑100 (MQ=255)
                                                      gaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCt                                               >  2:1271017/1‑100 (MQ=255)
                                                        aTGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTa                                             <  2:1798783/100‑1 (MQ=255)
                                                        aTGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTa                                             <  2:1975735/100‑1 (MQ=255)
                                                         tGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTac                                            >  1:871718/1‑100 (MQ=255)
                                                          ggCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTacc                                           <  2:1055868/100‑1 (MQ=255)
                                                           gCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTacca                                          <  1:3651305/100‑1 (MQ=255)
                                                            cGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccac                                         >  2:2314199/1‑100 (MQ=255)
                                                            cGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccac                                         >  1:3131523/1‑100 (MQ=255)
                                                            cGTAAGTTTTGTCTGGCAGAAAAAGCATAGTTAAGTGAAAGCCGGATAAGACACATAAAACGTCGCATCCGGCGAAAGTCCAACAGGAAACCCTTacca                                          >  1:2023862/1‑99 (MQ=255)
                                                               aaGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGCATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccaccac                                      <  1:2920584/100‑1 (MQ=255)
                                                                aGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccaccacc                                     >  2:442635/1‑100 (MQ=255)
                                                                aGTTTTGTCTGGCAGAAAACGCTTAGGTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTtccaccac                                      >  1:2149067/1‑99 (MQ=255)
                                                                     tGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTAcc                                <  1:3570244/100‑1 (MQ=255)
                                                                     tGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTAcc                                <  1:3082094/100‑1 (MQ=255)
                                                                      gTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCg                               <  2:3825019/100‑1 (MQ=255)
                                                                        cTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGAt                             <  2:3687595/100‑1 (MQ=255)
                                                                        cTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGAt                             >  2:534559/1‑100 (MQ=255)
                                                                          ggCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGAttt                           >  1:2479738/1‑100 (MQ=255)
                                                                           gCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTc                          >  1:1320124/1‑100 (MQ=255)
                                                                            cAGAAAACGCTTAGTTAAGTGAAAGCCGGCTAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTcc                         >  2:1779812/1‑100 (MQ=255)
                                                                            cAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTcc                         <  1:2448819/100‑1 (MQ=255)
                                                                             aGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCg                        >  2:663187/1‑100 (MQ=255)
                                                                              gAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCgg                       <  1:579862/100‑1 (MQ=255)
                                                                              gAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCgg                       >  1:2649874/1‑100 (MQ=255)
                                                                              gAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCgg                       >  1:3150825/1‑100 (MQ=255)
                                                                               aaaaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCggg                      <  1:2186701/100‑1 (MQ=255)
                                                                               aaaaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCggg                      <  1:1483128/100‑1 (MQ=255)
                                                                                 aaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTg                    <  1:2677606/100‑1 (MQ=255)
                                                                                 aaCGCTGAGTGAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCGCCGTACCGATTTCCGGGt                     <  2:3799923/99‑1 (MQ=255)
                                                                                  aCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTgg                   <  1:2234948/100‑1 (MQ=255)
                                                                                     cTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTa                >  2:2204291/1‑100 (MQ=255)
                                                                                         gTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGc            >  2:76692/1‑100 (MQ=255)
                                                                                         gTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGc            >  1:3592789/1‑100 (MQ=255)
                                                                                          ttAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCt           <  1:445901/100‑1 (MQ=255)
                                                                                           tAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTTGCTTCCCACCAACGTACCGATTTCAGGGTGGCTAAAGCTg          >  1:1155369/1‑100 (MQ=39)
                                                                                            aaGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTgg         >  2:1530408/1‑100 (MQ=255)
                                                                                             aGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGt        <  2:2491908/100‑1 (MQ=255)
                                                                                             aGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGt        >  2:2343019/1‑100 (MQ=255)
                                                                                              gTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccaca       <  1:34931‑M2/100‑62 (MQ=255)
                                                                                               tGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGCTTTCCGGGTGGCTAAAGCTGGTaa      >  2:241089/1‑100 (MQ=255)
                                                                                                gAAAGCCGGTTAAGACGCATCAAACGTCTCATCCGGCtttcacttaactaagcgttttctgccagacaaaacttacgccattctcaccttcagccacac      <  2:252851‑M2/99‑63 (MQ=255)
                                                                                                gAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCCATCAGAATTCGCTTACCACCACCGTACCGATTTCCGGGTGCCTAAAGCTGGt        >  1:1876700/1‑97 (MQ=255)
                                                                                                gAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt     >  1:2740975/1‑100 (MQ=255)
                                                                                                gAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt     >  1:3420612/1‑100 (MQ=255)
                                                                                                 aaaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtt    >  1:1299534/1‑100 (MQ=255)
                                                                                                  aaGCCGGATATGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttt   <  1:2547015/100‑1 (MQ=255)
                                                                                                  aaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttn   <  1:1354665/100‑2 (MQ=255)
                                                                                                  aaGCCAGACAAGCGGGATCAAACGCCGCAGCTGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttt   <  1:2633044/100‑1 (MQ=255)
                                                                                                   aGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTCCCGCTTTCCGGGTGGCTAAAGCTGGTAAtttt  >  1:719340/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GCTGATTGCGGCGGCAGGGGTATTTGTGACGCAAGAAGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTT  >  NC_000913/213536‑213734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.