| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3943543 | NA (NA) | 8 (0.070) | 7/156 | NT | 100% | intergenic (+33/‑161) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943583 | 0 (0.000) | intergenic (+73/‑121) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
GGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGT > NC_000913/3943474‑3943640 | ggcggTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGT > 2:2521535‑M2/1‑100 (MQ=255) gcggTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTT > 1:1341692‑M2/1‑100 (MQ=255) gcggTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTT < 2:2905870‑M2/100‑1 (MQ=255) cggTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCCCCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTT < 1:1741947‑M2/100‑1 (MQ=255) ggTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTG > 1:1697760‑M2/1‑100 (MQ=255) ggTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTG > 2:2564124‑M2/1‑100 (MQ=255) gTAACAGGGG‑TTCGCATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA > 1:2637836‑M2/1‑100 (MQ=255) gTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA > 2:1838210‑M2/1‑100 (MQ=255) gTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA < 2:3218708‑M2/100‑1 (MQ=255) gTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA < 1:2177528‑M2/100‑1 (MQ=255) gTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGA > 1:449803‑M2/1‑100 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG < 2:3351584‑M2/100‑1 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG > 2:1701197‑M2/1‑100 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG > 1:60913‑M2/1‑100 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG > 1:3645231‑M2/1‑100 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG > 1:3638621‑M2/1‑100 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG > 1:3402250‑M2/1‑100 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG > 2:281315‑M2/1‑100 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG > 1:2971419‑M2/1‑100 (MQ=255) tAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG > 1:2795870‑M2/1‑100 (MQ=255) tAACAGGGG‑TGCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTACTAGCTCAAAACTCATCTTCGGGTGATGTTTGAG > 1:2540984‑M2/1‑100 (MQ=255) ccctaggggaTTCGAA‑CCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG < 2:1826301‑M2/96‑1 (MQ=255) ccctaggggaTTCGAA‑CCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG < 2:1298984‑M2/96‑1 (MQ=255) aaCAGGGG‑TTAGATTCCCTTAGGGGACGCCAATTGTTGGTTTGTGTGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAG > 2:117034‑M2/1‑99 (MQ=255) aCAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGAT < 2:1895193‑M2/100‑1 (MQ=255) aCAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGAT < 2:322140‑M2/100‑1 (MQ=255) aCAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGAT < 2:393222‑M2/100‑1 (MQ=255) cAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA < 2:102580‑M2/100‑1 (MQ=255) cAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA < 1:968050‑M2/100‑1 (MQ=255) cAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA < 1:3616552‑M2/100‑1 (MQ=255) cAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA < 1:3281703‑M2/100‑1 (MQ=255) cAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA < 1:1678817‑M2/100‑1 (MQ=255) cAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA < 1:1111524‑M2/100‑1 (MQ=255) gggg‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 2:275618‑M2/100‑1 (MQ=255) gggg‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 1:243501‑M2/100‑1 (MQ=255) gggg‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATT < 1:1929335‑M2/100‑1 (MQ=255) g‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATA > 1:3665014‑M2/1‑95 (MQ=255) tGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcg < 2:1199442‑M2/100‑55 (MQ=255) gCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcga < 1:1223242‑M2/100‑56 (MQ=255) ccTTTATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaacaagcaagtggcgtcccctaggggattcga < 1:3628975‑M2/99‑56 (MQ=255) cTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaac < 2:2525307‑M2/100‑58 (MQ=255) | GGCGGTAACAGGGG‑TTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGT > NC_000913/3943474‑3943640 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |