| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,914,888 | T→G | Q216P (CAG→CCG) | proQ ← | RNA chaperone, putative ProP translation regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,914,888 | 0 | T | G | 96.6% | 204.7 / ‑1.8 | 59 | Q216P (CAG→CCG) | proQ | RNA chaperone, putative ProP translation regulator |
| Reads supporting (aligned to +/- strand): ref base T (1/1); new base G (28/29); total (29/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01 | |||||||||||
AAGCCTAAAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCT > NC_000913/1914796‑1914983 | aaGCCTAAAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAACGACATACCCGAATTCAGCGggacgcg > 1:174153/1‑100 (MQ=255) aGCCTAAAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGggacgcgg < 2:1395462/100‑1 (MQ=255) gCCTAAAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGggacgcgga > 2:1154489/1‑100 (MQ=255) ccTAAAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGggacgcggac > 2:368621/1‑100 (MQ=255) ccTAAAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGggacgcggac < 1:1491828/100‑1 (MQ=255) aaaaCATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGt > 1:704320/1‑100 (MQ=255) aaaaCATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGt < 2:1189746/100‑1 (MQ=255) aaaaCATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGt < 1:389418/100‑1 (MQ=255) aTGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTg < 2:687699/100‑1 (MQ=255) aTGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTg < 2:1071646/100‑1 (MQ=255) tGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTgg > 1:950789/1‑100 (MQ=255) aggCCTGGCCCGGCGTCCGTTTCAGCACACCAGGTGTTATGCGCGCACGCGCACAGACATACCCGAAATCAGCGGGACGCGGACGCCGTCTTTGGTGagt > 1:987716/3‑98 (MQ=255) gCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTc > 2:1401442/1‑100 (MQ=255) ccTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCt < 2:499398/100‑1 (MQ=255) cTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTa > 2:517424/1‑100 (MQ=255) ccGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACg < 2:236451/100‑1 (MQ=255) ccGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGcat < 1:1536016/100‑1 (MQ=255) gTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTgg < 1:799790/95‑1 (MQ=255) gTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGcatcc > 1:1589936/1‑100 (MQ=255) cgcAGAACACCTGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGcatccat > 1:1305962/3‑100 (MQ=255) gcAGAACACCTGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGcatccatc > 2:146772/2‑100 (MQ=255) cAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATcg > 1:1321784/1‑100 (MQ=255) cAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATcg > 1:450768/1‑100 (MQ=255) aGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATcgc > 2:44308/1‑100 (MQ=255) gAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATcgcg > 1:1530171/1‑100 (MQ=255) acCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGtttt < 2:1094930/100‑1 (MQ=255) acCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGtttt > 2:1475741/1‑100 (MQ=255) tctggTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTg < 2:594066/97‑1 (MQ=255) ccAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTg < 1:154781/100‑1 (MQ=255) cAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGa > 1:363899/1‑100 (MQ=255) ggTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGaga > 1:594062/1‑98 (MQ=255) cTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCttt > 2:1299480/1‑100 (MQ=255) cTGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCttt > 1:266940/1‑100 (MQ=255) tGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGTCATCCATCGCGTTTTGACCCGCTTTc < 2:974355/100‑1 (MQ=255) tGCGCGCACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTc < 1:490184/100‑1 (MQ=255) gcACAATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCtt > 2:212016/1‑100 (MQ=255) cacaATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTc < 1:1340835/100‑1 (MQ=255) cacaATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTc < 1:623517/100‑1 (MQ=255) caATCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAg > 1:1160396/1‑100 (MQ=255) aaTCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAgg < 1:262426/100‑1 (MQ=255) tCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGc < 1:264025/100‑1 (MQ=255) tCAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGc > 1:1509796/1‑100 (MQ=255) cAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGcn < 1:797619/100‑2 (MQ=255) cAAAGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCt < 2:1202266/100‑1 (MQ=255) aaaGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCtt > 1:1037932/1‑100 (MQ=255) aaGACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTg < 1:1154475/100‑1 (MQ=255) gACATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTc < 1:517420/100‑1 (MQ=255) aCATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTcc < 2:25364/100‑1 (MQ=255) cATACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCg < 2:878104/100‑1 (MQ=255) aTACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGa > 2:927332/1‑100 (MQ=255) tACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGAc < 1:1299466/100‑1 (MQ=255) tACCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGAc > 1:804512/1‑100 (MQ=255) aCCCGAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACa > 2:1095792/1‑100 (MQ=255) cccGAATTAAGCGGGACGCGGCCGCCGTCTTTGGTGATTTCTAATACGGTGGCGTCCATCGCGTTTTGACCTGCTTTCACCTTCAGGGCTTGTCCGACAg > 1:1109759/1‑100 (MQ=255) gAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCa < 2:266943/100‑1 (MQ=255) gAATTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCa < 1:1061241/100‑1 (MQ=255) aTTCAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCaga < 2:32052/100‑1 (MQ=255) cAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCt < 1:1090989/100‑1 (MQ=255) cAGCGGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCt > 2:1012661/1‑100 (MQ=255) | AAGCCTAAAAAACATGTTCATGCCTGGCCCGGCCTCCGTTTCAGAACACCAGGTGTTCTGCGCGCACAATCAAAGACATACCCGAATTCAGCTGGACGCGGACGCCGTCTTTGGTGATTTCTAATACGGTGGCATCCATCGCGTTTTGACCCGCTTTCACCTTCAGGGCTTGTCCGACAGTCAGAGCT > NC_000913/1914796‑1914983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |