New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 308308096 (0.710)17 (0.140) 8/164 NT 15.1% coding (718/921 nt) speB agmatinase
?NC_000913 = 3083094 103 (0.830)coding (704/921 nt) speB agmatinase

CTTCCACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3082975‑3083080
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctggATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGGCCTGACCTCCGATCGCGCTATTAAACTGGTACGCGGCCTGAAAGATCTCAACATTG  <  NC_000913/3083094‑3082996
                                                                                                                                                                                                             
CTTCCACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAAGAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGT                                                                                                           <  1:500001/100‑1
 TTCCACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTG                                                                                                          <  1:2646840/100‑1
 TTCCACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTG                                                                                                          <  1:942575/100‑1
 TTCCACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTG                                                                                                          <  1:901565/100‑1
  TCCACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGC                                                                                                         >  1:2279117/1‑100
   CCACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCC                                                                                                        >  2:2129983/1‑100
   CCACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCC                                                                                                        <  1:814855/100‑1
    CACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCT                                                                                                       >  2:3088976/1‑100
     ACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTG                                                                                                      <  2:18373/100‑1
     ACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTG                                                                                                      >  1:321818/1‑100
      CTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGG                                                                                                     <  2:1669327/100‑1
      CTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGG                                                                                                     <  2:3784482/100‑1
      CTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGG                                                                                                     <  2:3119655/100‑1
      CTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGG                                                                                                     <  2:2377713/100‑1
          aaagATCTCAACATTGTTGGGCTCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGcgg                                                                                                   >  1:2175209/5‑95
                            GAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCAC                                                                               <  2:3730419/100‑1
                             AGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACC                                                                              <  2:3502529/100‑1
                             AGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACC                                                                              <  2:783624/100‑1
                             AGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACC                                                                              <  2:931379/100‑1
                             AGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACC                                                                              <  2:1663388/100‑1
                             AGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACC                                                                              <  2:1488068/100‑1
                             AGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACC                                                                              <  1:925609/100‑1
                             AGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACC                                                                              <  1:908906/100‑1
                             AGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACC                                                                              <  2:139165/100‑1
                             AGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCG‑CAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACCG                                                                             <  1:2159333/100‑1
                              GATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACCG                                                                             <  2:1126709/100‑1
                              GATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACCG                                                                             <  2:3430765/100‑1
                               ATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACCGG                                                                            <  1:423233/100‑1
                                 CTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACCGGTA                                                                          <  2:1044588/100‑1
                                  TTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACCGGTAC                                                                         <  1:2781523/100‑1
                                          CGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGA                                                                 <  2:1770047/100‑1
                                                 CAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGGATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGG                                                          <  2:3523848/100‑1
                                                                                                    GCCTGGATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGGCCTGACCTCCGATCGCGCTATTGAACTGGTACGCGGCCTGAAAGATCTCAA       >  2:3657075/1‑100
                                                                                                    GCCTGGATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGGCCTGACCTCCGATCGCGCTATTAAACTGGTACGCGGCCTGAAAGATCTCAA       >  2:1204469/1‑100
                                                                                                    GCCTGGATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGGCCTGACCTCCGATCGCGCTATTAAACTGGTACGAGGCCTGAAAGATCTCAA       >  2:1883229/1‑100
                                                                                                     CCTGGATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGGCCTGACCTCCGATCGCGCTATTAAACTGGTACGCGGCCTGAAAGATCTCAAC      >  2:2936496/1‑100
                                                                                                     CCTGGATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGGCCTGACCTCCGATCGCGCTATTAAACTGGTACGCGGCCTGAAAGATCTCAAC      <  1:581152/100‑1
                                                                                                       ctGATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGGCCTGACCTCCGATCGCGCTATTAAACTGGTACGCGGCCTGAAAGATCTCAACAT    <  1:3657781/98‑1
                                                                                                       TGGATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGGCCTGACCTCCGATCGCGCTATTAAACTGGTACGCGGCCCGAAAGATCTCAACAT    >  1:897830/1‑100
                                                                                                        GGATCCTGCTTTTGCACCATGCACCGGTACGCCAGTGATTGGCGGCCTGACATCCGATCGCGCTATTAAACTGGTACGCGGCCTGAAAGATCTCAACAT    <  1:3658078/99‑1
                                                                                                        GGATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGGCCTGACCTCCGATCGCGCTATTAAACTGGTACGCGGCCTGAAAGATCTCAACATT   >  2:1352499/1‑100
                                                                                                         GATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGGCCTGACCTCCGATCGCGCTATTAAACTGGTACGCGGCCTGAAAGATCTCAACATag  >  2:3657804/1‑98
                                                                                                                                                                                                             
CTTCCACTACGTCCATCCCAACAATGTTGAGATCTTTCAGGCCGCGTACCAGTTTAATAGCGCGATCGGAGGTCAGGCCGCCAATCACTGGCGTACCGGTGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3082975‑3083080
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcctggATCCTGCTTTTGCACCAGGCACCGGTACGCCAGTGATTGGCGGCCTGACCTCCGATCGCGCTATTAAACTGGTACGCGGCCTGAAAGATCTCAACATTG  <  NC_000913/3083094‑3082996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.