New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3620614NA (NA)25 (0.200) 10/166 NT 100% coding (1423/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 = 3620635 0 (0.000)coding (1444/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAAcgtcag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3620516‑3620614
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTCAGGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCACAT  <  NC_000913/3620635‑3620531
                                                                                                                                                                                                             
CAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAAC                                                                                                           <  2:472414/100‑1
CAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATAGGCG‑TTTACTATAACCACCACAACCAGTTAACG                                                                                                          >  2:735088/1‑100
CAGAGTACAGCCCGGATGTGGTGACAGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAAC                                                                                                           >  2:2365710/1‑100
 AGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACG                                                                                                          <  2:793224/100‑1
 AGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACG                                                                                                          <  2:1426251/100‑1
 AGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACG                                                                                                          <  1:574665/100‑1
 AGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACG                                                                                                          <  2:1063530/100‑1
 AGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACG                                                                                                          <  2:3778732/100‑1
   AGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTC                                                                                                        <  2:2484033/100‑1
   AGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTC                                                                                                        <  1:3739127/100‑1
   AGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTC                                                                                                        <  2:804448/100‑1
   AGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTC                                                                                                        >  2:1248992/1‑100
   AGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTC                                                                                                        <  1:3534236/100‑1
     TACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTCTAACCACCACAACCAGTTAACGTCAG                                                                                                      >  1:661044/1‑100
     TACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAG                                                                                                      <  2:3589965/100‑1
     TACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAG                                                                                                      <  1:773008/100‑1
     TACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAG                                                                                                      >  2:139106/1‑100
     TACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAG                                                                                                      <  2:2774280/100‑1
     TACAGCCCGGAGGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAG                                                                                                      <  1:519960/100‑1
      ACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGG                                                                                                     >  1:3131012/1‑100
                      tctGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGC‑CCGGTGGCTGACGTT                                                                                    <  2:368424/97‑1
                      GACGGTCCTCATCACGCGCATAACCACGCCGTATGGCAGGGCATTGGCGTTTTACTATAACCTCCACATCCAGTTAACGTCAGGC‑CCGGTGGCTGACGTT                                                                                    <  2:214691/100‑1
                      GACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGGC‑CCGGTGGCTGACGTT                                                                                    <  1:1100218/100‑1
                      GACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGGC‑CCGGTGGCTGACGTT                                                                                    <  2:3122118/100‑1
                      GACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGGC‑CCGGTGGCTGACGTT                                                                                    <  2:1493324/100‑1
                      GACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGC‑CCGGTGGCTGACGTT                                                                                    <  1:3164790/100‑1
                      GACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGC‑CCGGTGGCTGACGTT                                                                                    <  1:1290536/100‑1
                      GACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGC‑CCGGTGGCTGACGTT                                                                                    <  2:700381/100‑1
                      GACGGGCCTCAACACGCGCATAACCACGCCGTATGGCAGGGCATCGGCGTTTTACTATATCCACCACAACCAGTTAACGTCAGGC‑CCGGTGGCTGACGTT                                                                                    <  1:2418748/100‑1
                       ACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGC‑CCGGTGGCTGACGTTA                                                                                   <  1:382321/100‑1
                        CGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGC‑CCGGTGGCTGACGTTAA                                                                                  <  2:3510159/100‑1
                         GGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGGC‑CCGGTGGCTGACGTTAAC                                                                                 <  1:324134/100‑1
                         GGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAACGTCAGGC‑CCGGTGGCTGACGTTAga                                                                                 >  1:368419/1‑98
                           GCCTCATCCCGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGGC‑CCGGTGGCTGACGTTAACTG                                                                               <  2:629335/100‑1
                           GCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGGC‑CCGGTGGCTGACGTTAACTG                                                                               <  2:1339624/100‑1
                              TCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAGCCAGTTAACGTCAGGC‑CCGGTGGCTGACGTTAACTGGct                                                                            <  2:3199777/100‑3
                                                                                   CACCACAACCAGTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCG                       >  2:327204/1‑100
                                                                                          ACCAGTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAG                >  1:2768518/1‑100
                                                                                           CCAGTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGG               >  2:544482/1‑100
                                                                                           CCAGTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGG               >  1:1423909/1‑100
                                                                                            CAGTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAACACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGC              >  1:358032/1‑100
                                                                                            CAGTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGC              >  2:3131029/1‑100
                                                                                            CAGTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGC              >  1:3001804/1‑100
                                                                                             AGTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCC             >  2:870609/1‑100
                                                                                             AGTTAACGTCAGCC‑ACCGGGCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCC             >  2:1581318/1‑100
                                                                                              GTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCC            >  1:1469554/1‑100
                                                                                              GTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCC            >  1:809598/1‑100
                                                                                              GTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCC            >  2:1108946/1‑100
                                                                                              GTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCC            >  2:2109478/1‑100
                                                                                              GTTAACGTCAGCCACCGG‑GCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATACGCGTGATGAGGCCC            >  1:118973/1‑100
                                                                                              GTTAACGTCAGCC‑ACCGGGCCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCC            >  2:3110142/1‑100
                                                                                              GTTAACGTCAGCC‑ACCGGGCCTGACGTTAACTGGTTGTAGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCC             >  1:2346801/1‑99
                                                                                                   CGTCAGGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCAC       <  1:2101792/100‑1
                                                                                                   CGTCAGGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCAC       >  2:504751/1‑100
                                                                                                    GTCAGGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACC      <  2:164492/100‑1
                                                                                                    GTCAGGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACC      >  2:127427/1‑100
                                                                                                     TCAGGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCA     <  1:871891/100‑1
                                                                                                      CAGGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCAC    >  2:171709/1‑100
                                                                                                      CAGGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCAC    <  1:2751269/100‑1
                                                                                                      CAGGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCAC    <  2:1995155/100‑1
                                                                                                       AGGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCACA   <  1:2608248/100‑1
                                                                                                       AGGC‑CCAGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCACA   <  2:1760252/100‑1
                                                                                                        GGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCACAT  >  1:70790/1‑100
                                                                                                        GGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCACAT  >  2:2476149/1‑100
                                                                                                        GGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCACAT  >  1:1562010/1‑100
                                                                                                        GGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCACAT  >  2:2399642/1‑100
                                                                                                        GGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCAC    >  1:3331650/1‑98
                                                                                                        GGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCAC    >  2:1769801/1‑98
                                                                                                                                                                                                             
CAGAGTACAGCCCGGATGTGGTGACGGGCCTCATCACGCGCATAACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCACAACCAGTTAAcgtcag‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3620516‑3620614
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGTCAGGC‑CCGGTGGCTGACGTTAACTGGTTGTGGTGGTTATAGTAAAACGCCGATGCCCTGCCATCCGGCGTGGTTATGCGCGTGATGAGGCCCGTCACCACAT  <  NC_000913/3620635‑3620531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.