| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4148478 | NA (NA) | 12 (0.100) | 9/164 | NT | NA | noncoding (49/82 nt) | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4148511 | NA (NA) | noncoding (82/82 nt) | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP308 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
AAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4148381‑4148478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACA < NC_000913/4148511‑4148406 AAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGC > 2:3531584/1‑100 GTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGG < 1:1424658/100‑1 GTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGG < 1:3467773/100‑1 GTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGG < 1:2624546/100‑1 TGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAAGGCCTTATTCAGCCTACCGCCGCGATCTGTAGGGCGGA > 1:1419792/1‑100 TGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGA < 2:177001/100‑1 GTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGAT > 2:3214942/1‑100 AAACATTGCGGCAGTTGTGTTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTCCCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATC < 1:1802171/99‑1 AAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCC < 1:2739320/100‑1 AACATTGCGGCAGTTGTATTGCCGGATGTGGCGTCAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCG < 1:2005927/100‑1 ACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGG < 1:3297515/100‑1 CATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGC < 1:705797/100‑1 ATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAATGCCTTATCCAGCTTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGACTTTTCCGGCn < 1:2007216/100‑2 ATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGCC < 2:2152590/100‑1 ATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGCC < 2:1231041/100‑1 TTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGCCT < 2:3093848/100‑1 TGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGCCT < 1:2721907/99‑1 GCGGCAGTAGTATTGCCGGATGTGGCGTAAGCGCGTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTCTTATCCGGCCTAC < 1:812102/100‑1 GGCGGAAGCGCCTTATCCAGCCTACCGCCGCGATCTGTAGGCCGGATGCGACGCTTGACGCGTGTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGAT < 1:1046697/99‑1 AGGCCGGATAAGACGCGTCAAGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCA > 2:184315/1‑99 GCCGGATGCGACTCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATG < 1:60911/100‑1 GCCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGCTAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATG > 1:474702/1‑100 GCCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGagatcgga > 2:2941196/1‑92 CCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGT < 1:265414/100‑1 CCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGT > 2:2663606/1‑100 GGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTT > 1:2836796/1‑100 GGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTT < 2:2156973/100‑1 GGATGCGACGCTGGGCGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCAGGCAATACAACTGCCGCAATGTTT < 1:3173365/100‑1 GATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTA < 2:1199181/100‑1 GATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTA < 1:2546175/100‑1 ATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTA < 1:1451782/99‑1 ATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTA < 1:1047277/99‑1 TGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACA > 1:1712095/1‑100 AAAGTGTGGCCTGAGGGGAGTTCGATGTAAACATTGCGGCAGTTGTATTGCCGGATGTGGCGTAAACGCCTTATCCAGCCTACCGCCGCGATCTGTAGgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4148381‑4148478‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATGCGACGCTTGACGCGTCTTATCCGGCCTACAGATCGCGGCGGTAGGCTGGATAAGGCGTTTACGCCACATCCGGCAATACAACTGCCGCAATGTTTACA < NC_000913/4148511‑4148406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |