| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4536412 | NA (NA) | 12 (0.100) | 8/166 | NT | NA | noncoding (8/26 nt) | REP344 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP344 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4536422 | NA (NA) | noncoding (18/26 nt) | REP344 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP344 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4536308‑4536412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggatgCCTTAATAGACATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACTGGAACGTTTTGGGCCACAGCGTTCGCAGCACCG < NC_000913/4536422‑4536324 GAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGC < 1:133888/100‑1GAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGC > 1:619341/1‑100GAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGC < 2:589793/100‑1 AACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCG < 1:1639345/100‑1 AACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCG < 1:1790112/100‑1 ACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGG > 2:1212361/1‑100 ACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGG < 2:1053494/100‑1 CGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGA < 1:1508149/100‑1 GGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGAT < 1:3790530/100‑1 tCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGCCTTAATAGACATCC < 1:225394/99‑1 CTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGCCTTAATAGACATCCa > 2:225399/1‑99 TGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGCCTTAATAGACATCCGC < 2:2146202/100‑1 GCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGCCTTAATAGACATCCGCG < 1:2443991/100‑1 GCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGCCTTAATAGACATCCGCG < 1:3557884/100‑1 GCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGCCTTAATAGACATCCGCG < 2:3544841/100‑1 GCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGCCTTAATAGACATCCGCG < 1:103190/100‑1 GCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGCCTTAATAGACATCCGCG < 1:921094/100‑1 GCGAACGCTGTGGCCCAAAACGTTCAAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGCCTTAATAGACATCCGCG < 2:1050259/100‑1 TGTGGCCCAAACCCTGCCAGTAAACTGTGTAGATGTTCTTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATGCCTTAATAGACATCCGCGCCTTTTC < 1:1384656/99‑1 cctAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCTGATGCCTTAATAGACATCCGCGCCTTTTCGATTAT < 1:1261308/97‑1 atACTGTGTAGATGTTCTTAGTTTTACGAGCCATAATCGAAAAGGCGCGGATGCCTTAATAGACATCCGCGCTTTTTCGATTATGGCTCGGAAA < 1:1245101/92‑1 AGGCGCGGATGTCTATTAAGGCATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACTGGAACGTTTTGGGCCACAGCGTT > 2:2273743/1‑100 tCGGATGCCTTAATAGACATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACTGGAACGTTTTGGGCCACAGCGTTCGCA < 1:1484797/99‑1 CGGATGCCTTAATAGACATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACTGGAACGTTTTGGGCCACAGCGTTCGCAG < 2:2616221/100‑1 CGGATGCCTTAATAGACATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACTGGAACGTTTTGGGCCACAGCGTTCGCAG < 2:3527972/100‑1 CGGATGCCTTAATAGACATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACCGGAACGTTTTGGGCCACAGCGTTCGCAa > 2:1484806/1‑99 GGATGCCTTAATAGACATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACTGGAACGTTTTGGGCCACAGCGTTCGCAGn < 2:665310/100‑2 GGATGCCTTAATAGACATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACTGGAACGTTTTGGGCCACAGCGTTCGCAGC < 2:3552235/100‑1 GGATGCCTTAATAGACATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACTGGAACGTTTTGGGCCACAGCGTTCGCAGC > 1:231048/1‑100 ATGCCTTAATAGACATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACTGGAACGTTTTGGGCCACAGCGTTCGCAGCAC < 1:1369534/100‑1 GCCTTAATAGACATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACTGGAACGTTTTGGGCCACAGCGTTCGCAGCACCG < 1:389765/100‑1 GAACGGCATATCAGGACGGTGCTGCGAACGCTGTGGCCCAAAACGTTCCAGTAAACTGTGTAGATGTTCGTAGATTTCCGAGCCATAATCGAAAAGGCGCGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4536308‑4536412‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggatgCCTTAATAGACATCCGCGCCTTTTCGATTATGGCTCGGAAATCTACGAACATCTACACAGTTTACTGGAACGTTTTGGGCCACAGCGTTCGCAGCACCG < NC_000913/4536422‑4536324 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |