New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 4587878NA (NA)23 (0.190) 9/162 NT NA noncoding (7/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 4587891 NA (NA)noncoding (20/27 nt) REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences

CGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4587774‑4587878
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggatAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCGA  <  NC_000913/4587891‑4587793
                                                                                                                                                                                                            
CGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGC                                                                                                          <  2:516192/100‑1
  CCTGGTGCACTTAGTGATCGAAAACGAAGTAGGGGTTTGTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCG                                                                                                        >  1:2350761/1‑100
  CCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCG                                                                                                        <  2:1073729/100‑1
   CTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGG                                                                                                       <  2:382286/100‑1
    TGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAAGTGGATATGGACTATTTTGAGTGAAATATCAGGTCGGA                                                                                                      >  1:2570356/1‑100
                 GATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCG                                                                                         >  2:2143184/1‑100
                        AACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGG                                                                                  <  1:143871/100‑1
                         ACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGC                                                                                 <  1:2143174/100‑1
                         ACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGC                                                                                 <  2:3250305/100‑1
                         ACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGC                                                                                 <  1:995205/100‑1
                          CGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCC                                                                                <  1:151230/100‑1
                          CGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCC                                                                                <  2:363047/100‑1
                           GAAGTAGGGGTTTTTTCACGTTTGTTGAGGGTGCCGAAACTGGATATGGACGATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCTGCAGCCGGCCT                                                                               <  1:1991922/100‑1
                           GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  2:2784842/100‑1
                           GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  2:3662637/100‑1
                           GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  1:3106051/100‑1
                           GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  2:3043403/100‑1
                           GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  1:3638558/100‑1
                           GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  2:2554399/100‑1
                           GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  2:2052453/100‑1
                           GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  2:190157/100‑1
                           GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  2:1509217/100‑1
                            agGTAGGGGTTGGTTGACGTTTGTGGAAGGTGCCGAAACGGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                               <  1:3108057/97‑1
                            AAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTG                                                                              <  2:3090030/100‑1
                            AAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTG                                                                              <  1:2823428/100‑1
                              GTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGAT                                                                            <  2:3119949/100‑1
                              GTAGGGGTTTCTTCACGTTTGTGGAAGGTGCCGAAACGGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGA                                                                             <  1:2150731/99‑1
                                     TTTCCTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCAC                                                                     <  2:1924303/100‑1
                                                                                                 GGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCG         >  2:2349288/1‑100
                                                                                                 GGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCG         >  2:2867270/1‑100
                                                                                                 GGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCG         <  2:3123426/100‑1
                                                                                                 GGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCG         >  2:3438978/1‑100
                                                                                                  GCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGT        >  2:3517099/1‑100
                                                                                                    CGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTT      <  2:1073901/100‑1
                                                                                                     GGATAAGGTGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTT     >  1:3769838/1‑100
                                                                                                        TAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCGn  <  1:348036/100‑2
                                                                                                        TAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCGA  <  1:350642/100‑1
                                                                                                        TAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCG   <  2:2071817/99‑1
                                                                                                                                                                                                            
CGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4587774‑4587878
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggatAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCGA  <  NC_000913/4587891‑4587793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.