New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	937227 =	NA (NA)	15 (0.120)	8/162	NT	NA	noncoding (4/36 nt)	REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	937261 =	NA (NA)					intergenic (+48/‑111)	ftsK/lolA	DNA translocase at septal ring sorting daughter chromsomes/lipoprotein chaperone

CCCTCTACTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/937333‑937227 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcaCTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAT  >  NC_000913/937261‑937358                                                                                                                                                                                                               CCCTCTACTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTA                                                                                                           <  1:140486/100‑1  CCTCTACTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTAT                                                                                                          >  1:265982/1‑100  CCTCTACTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTAT                                                                                                          >  1:3325006/1‑100   CTCTACTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGGGCCTTATC                                                                                                         >  2:3068222/1‑100      TACTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTATCCGG                                                                                                      <  2:3188751/100‑1      TACTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTATCCGG                                                                                                      >  2:2609454/1‑100       ACTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTATCCGGC                                                                                                     <  2:2482054/100‑1       ACTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTATCCGGC                                                                                                     <  2:1765413/100‑1        CTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTATCCGGCA                                                                                                    >  2:1216612/1‑100        CTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTATCCGGCA                                                                                                    <  2:1182645/100‑1        CTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGAGACGGATGCGACGCTACCGCGCCTTATCCGGCA                                                                                                    >  2:3722969/1‑100                                   TGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGAGCCGGATACAACGCTATCGCCCCTTATCCGGCACTCTATCAACTGAAAACTC                                                                                 >  1:3061075/1‑92                                                              CAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCC                                              >  2:1653962/1‑100                                                               AGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCT                                             >  1:1382997/1‑100                                                                      AGAGTGCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAG                                      >  1:120530/1‑100                                                                        AGTGCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAG                                    >  2:3358059/1‑100                                                                        AGTGCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAG                                    >  2:1797093/1‑100                                                                        AGTGCCGGATGCGACGCTACCGCGCCTTATCAGGCACTCTATCAACTGAAAATTCAGTATTTTCACCTTTCCTCAAGCTGATTATTAACCTGGAATA                                       >  1:1397092/1‑97                                                                         GTGCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGA                                   >  2:520895/1‑100                                                                         GTGCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGA                                   >  2:3639299/1‑100                                                                         GTGCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGA                                   >  2:3133371/1‑100                                                                         GTGCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGA                                   >  1:1845147/1‑100                                                                           GCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGACTAGAGAGT                                 >  2:15444/1‑100                                                                           GCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGT                                 >  1:237347/1‑100                                                                           GCCGGATGCGACGCTACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGT                                 >  2:2794395/1‑100                                                                                 TGCGACGATACCGCGCCTTATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGG                           >  2:2000363/1‑100                                                                                                    ATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTtc        <  1:2687379/100‑3                                                                                                    ATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTtc        <  2:2085953/100‑3                                                                                                    ATCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGA        <  2:2771926/100‑1                                                                                                     TCCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGAGAACTCCCGATCGGGAGTGAC       >  1:2690674/1‑100                                                                                                      CCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTtccc      <  2:146947/100‑5                                                                                                      CCGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTtccc      <  2:3681319/100‑5                                                                                                       CGGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGT     >  1:3761908/1‑100                                                                                                        GGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTA    <  2:2811500/100‑1                                                                                                        GGCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTA    >  1:530196/1‑100                                                                                                         GCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAA   <  2:1927154/100‑1                                                                                                         GCACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAA   >  1:817201/1‑100                                                                                                          CACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAT  >  2:116689/1‑100                                                                                                          CACTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAT  >  2:3626155/1‑100                                                                                                                                                                                                               CCCTCTACTCTCTATTCCAGGCTAATAATCAGCTTGAGGAAAGAAGAAAATACTGAATTTTCAGTTGATAGAGTGCCGGATGCGACGCTACCGCGCCTTATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/937333‑937227 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcaCTCTATCAACTGAAAATTCAGTATTTTCTTCTTTCCTCAAGCTGATTATTAGCCTGGAATAGAGAGTAGAGGGAACTCCCGATCGGGAGTGACGTAAT  >  NC_000913/937261‑937358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.