| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2502824 | 108 (0.800) | 22 (0.180) | 11/164 | NT | 17.9% | coding (1662/2496 nt) | fryA | putative PTS enzyme: Hpr, enzyme I and IIA components |
| ? | NC_000913 | = 2502837 | 103 (0.830) | coding (1649/2496 nt) | fryA | putative PTS enzyme: Hpr, enzyme I and IIA components | |||||
ATGGCGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2502721‑2502824‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgaccACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGCTAT < NC_000913/2502837‑2502739 ATGGCGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATC < 1:1138251/100‑1ATGGCGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATC < 1:3165063/100‑1 GGCGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGA < 1:2247944/100‑1 GCGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGAC < 1:1887100/100‑1 GCGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGAC > 1:3236062/1‑100 GCGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGAC < 1:2415480/100‑1 GCGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGAC > 2:2393243/1‑100 GCGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGAC > 2:1780082/1‑100 GCGGAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGAC < 1:426989/100‑1 CGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACC < 1:509463/100‑1 CGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACC < 2:3536875/100‑1 CGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACC < 1:691590/100‑1 CGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACC < 2:2391554/100‑1 GTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACC < 1:2079996/99‑1 GTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGAGACTGGGTCATATCGTTGGAGTCGATACTGAAGAAATCGACC < 1:1301408/99‑1 acTCGGGTTATATAGCGGCGATCCGCGCGGCTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACC < 2:3038707/95‑1 CGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCG < 2:3038025/100‑1 CGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCG < 2:3236080/100‑1 GCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGAT < 2:356289/100‑1 CGATACGCGCGTGTTATTAGGATCGACCGCATACAGATACTGGGTCATATCGTTGGATCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATT < 1:1671728/100‑1 CGATACGCGCGGGTTATTACGATCGACCTCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGAT < 1:912868/99‑1 CGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATT < 2:694388/100‑1 CGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATT < 2:712079/100‑1 CGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATT < 1:1857632/100‑1 CGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATT < 1:2085047/100‑1 GATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTT > 1:1168218/1‑100 GATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTT < 1:2457329/100‑1 ATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTTC < 2:2149837/100‑1 TACGCGCGGGTTATTGCGATAGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTTCT < 2:522529/100‑1 TACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTTC < 2:119619/99‑1 CGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTTCTTC < 2:1168225/100‑1 GCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTTCTTCA < 2:3188432/100‑1 GCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTTCTTC < 1:1383447/99‑1 GCGCGGGTGATTACGATCGACCGCATACAGATACTTGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATGTCTTC < 1:3230428/99‑1 gttTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTTCTTCAGT < 2:3060290/95‑1 gtTTATTACGATCGACCGCATACAGAGACTGGGTCATATCGTTGGAGCTGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTTCTTCA < 1:1139240/93‑1 TTATTACGATCGACCGCATACAGAAACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTTCTTCA < 1:2667397/93‑1 TATCGTTGGAGCCGATACTGAAGAAATCGACCACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTATCTGTATGCGGTC > 2:2762049/1‑100 ATCGACCACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGC < 2:2816321/100‑1 ATCGACCACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGC < 2:2484513/100‑1 GACCACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTCTCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGC > 1:3768661/1‑100 GACCACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGC > 1:669444/1‑100 GACCACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGC > 1:3054760/1‑100 ACCACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGCT < 2:3127919/100‑1 ACCACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGCT > 2:1784650/1‑100 ACCACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGCT < 2:70893/100‑1 CCACTTCTGCGATGAGGTCGATTTCTTCAGCACCGGCTCCAACGATATGACCCAGTCTCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGC < 1:3234442/98‑1 CACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGCTAT > 1:1305161/1‑100 ATGGCGTAATCGGGTTATATAGCGGCGATACGCGCGGGTTATTACGATCGACCGCATACAGATACTGGGTCATATCGTTGGAGCCGATACTGAAGAAATCGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2502721‑2502824‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcgaccACTTCTGCGATGAGGTCGATTTCTTCAGTATCGGCTCCAACGATATGACCCAGTATCTGTATGCGGTCGATCGTAATAACCCGCGCGTATCGCCGCTAT < NC_000913/2502837‑2502739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |