BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	707773 =	NA (NA)	18 (0.150)	8/160	NT	NA	noncoding (4/165 nt)	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site
*	?	NC_000913	707805 =	NA (NA)	18 (0.150)	8/160	NT	NA	noncoding (36/165 nt)	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

Only 100 of 211 total aligned reads displayed.

GATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATC  >  NC_000913/707674‑707871

tacaaaagcacgcaaactcaatatattgcagagatcatgtaagcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctt                                                                                                    <  1:2112176‑M1/1‑1 (MQ=255)

gATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTAt                                                                                                    >  1:1957693/1‑100 (MQ=255)

  caaaagcacgcaaactcaatatattgcagagatgatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGc                                                                                                  <  1:2290740‑M1/3‑1 (MQ=255)

   aaaagcacgcaaactcaatatattgcagagatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGcc                                                                                                 <  2:1129918‑M1/4‑1 (MQ=255)

   aaaagcacgcaaactcaatatattgcagagatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGcc                                                                                                 >  2:2279219‑M1/97‑100 (MQ=255)

   aGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGcc                                                                                                 >  1:2825599/1‑100 (MQ=255)

    gccgccATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCg                                                                                                >  2:2043983/1‑100 (MQ=255)

    gccgccATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCg                                                                                                >  2:3691904/1‑100 (MQ=255)

    gccgccATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCg                                                                                                >  1:131537/1‑100 (MQ=255)

    gccgcaATTCTACGGCGGAAAAACCGGTATGTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGcc                                                                                                 <  1:1141175/99‑1 (MQ=255)

    aaagcacgcaaactcaatatattgcagagatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCg                                                                                                >  1:420378‑M1/96‑100 (MQ=255)

     ccgccATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCgg                                                                                               >  2:2969967/1‑100 (MQ=255)

     ccgccATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGCAATTTTAAGTTTCGCTATGCCgg                                                                                               >  1:2654025/1‑100 (MQ=255)

     aagcacgcaaactcaatatattgcagagatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCgg                                                                                               >  2:1958929‑M1/95‑100 (MQ=255)

      cgccATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGa                                                                                              >  1:3035048/1‑100 (MQ=255)

        ccATTCTACGGCGGAAAAACCGGTAATTAACCGCACCGTTGGGCTGTGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCgt                                                                                               <  1:3678115/97‑2 (MQ=255)

        cacgcaaactcaatatattgcagagatcatgtaggcctgataagcgtagcgcattaggctatttagggtttggaactgtttgtcttttcctTGCCGGATg                                                                                            <  1:2074034‑M1/9‑1 (MQ=255)

        cacgcaaactcaatatattgcagagatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATg                                                                                            >  1:1947640‑M1/92‑100 (MQ=255)

             aaactcaatatattgcagagatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCg                                                                                       >  1:1572224‑M1/87‑100 (MQ=255)

              tACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGt                                                                                      <  2:457979/100‑1 (MQ=255)

                 ggcggAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATggg                                                                                          >  1:2962138/1‑93 (MQ=255)

                 ggcggAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTa                                                                                   <  2:2383209/100‑1 (MQ=255)

                   cggAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACg                                                                                 <  1:835011/100‑1 (MQ=255)

                     gAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTc                                                                               <  1:3584519/100‑1 (MQ=255)

                     gAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTc                                                                               >  1:2991878/1‑100 (MQ=255)

                     gAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTc                                                                               >  1:55267/1‑100 (MQ=255)

                     gAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTc                                                                               <  1:821174/100‑1 (MQ=255)

                       aaaaCCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGc                                                                             >  1:881085/1‑100 (MQ=255)

                           ccGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATcc                                                                         >  1:2910963/1‑100 (MQ=255)

                              gagatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCGTTTACGTCGCATCCGGc                                                                      >  1:2189482‑M1/70‑100 (MQ=255)

                              gagatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCGTTTACGTCGCATCCGGc                                                                      >  1:947022‑M1/70‑100 (MQ=255)

                              gagatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCGTTTACGTCGCATCCGGc                                                                      >  1:3553658‑M1/70‑100 (MQ=255)

                              gagatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtcggttcctTGCCGGATGGGGCGTTTATGTCGCATCCGGc                                                                      >  1:984943‑M1/70‑100 (MQ=255)

                              gTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGc                                                                      <  2:706250/100‑1 (MQ=255)

                               agatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCGTTTACGTCGCATCCGGCa                                                                     >  2:3641856‑M1/69‑100 (MQ=255)

                               agatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCGTTTACGTCGCATCCGGCa                                                                     >  1:1383230‑M1/69‑100 (MQ=255)

                                gatcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCGTTTACGTCGCATCCGGCaa                                                                    >  2:1044016‑M1/68‑100 (MQ=255)

                                aTTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCaa                                                                    >  2:1092975/1‑100 (MQ=255)

                                aTTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCa                                                                     >  1:3228947/1‑99 (MQ=255)

                                 tttAAGCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCTTTTACGTCGCATCCGGCAAg                                                                   <  2:759274/100‑1 (MQ=255)

                                 tttAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAg                                                                   <  2:1587050/100‑1 (MQ=255)

                                 tttAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAg                                                                   >  2:3236242/1‑100 (MQ=255)

                                  tcatgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCGTTTACGTCGCATCCGGCAAgg                                                                  >  2:3075235‑M1/66‑100 (MQ=255)

                                   tAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGa                                                                 >  1:3623572/1‑100 (MQ=255)

                                   catgtaggcctgataagcgtagcgcatcaggcaatttagcgtttgaaactgtttgtctgttcctTGCCGGATGGGGCGTTTACGTCGCATCCGGCAAgg                                                                  >  2:1502207‑M1/65‑99 (MQ=255)

                                        gtaCCGATGGGCTGAGTGCTACCTGGGCGAAAGTAGGTCAGTACCTTTATGTTTCGCTATGCCGGCTGGGGCGTTTACGCCGCATCCGGCaac                                                                   <  1:1826175/91‑2 (MQ=21)

                                        gCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGa                                                            <  2:2520162/100‑1 (MQ=255)

                                        gCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGa                                                            <  1:3449446/100‑1 (MQ=255)

                                            cGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACaaa                                                        <  2:1439525/100‑1 (MQ=255)

                                               tGGGCTGGGTGATACCTGGGCGAAAGTAGTCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCTCATCCGGCAAGGAACAGACAAACAg                                                     <  1:20091/100‑1 (MQ=255)

                                                gggCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGt                                                    <  2:1303195/100‑1 (MQ=255)

                                                gggCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGt                                                    <  2:1321951/100‑1 (MQ=255)

                                                 ggCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGtt                                                   <  1:2599430/100‑1 (MQ=255)

                                                  gCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGttt                                                  >  1:3173549/1‑100 (MQ=255)

                                                   cTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGATTc                                                 >  2:2755508/1‑100 (MQ=255)

                                                       gTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACaagatcggaa                                             >  1:1629562/1‑91 (MQ=255)

                                                       gTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAAc                                             >  2:3690642/1‑100 (MQ=255)

                                                       gTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAAc                                             <  2:164828/100‑1 (MQ=255)

                                                       gTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAAc                                             <  2:408269/100‑1 (MQ=255)

                                                         gATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGc                                           >  2:883664/1‑100 (MQ=255)

                                                             ccTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGGCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTaaa                                       >  2:2886630/1‑100 (MQ=255)

                                                              cTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAAt                                      >  2:2187797/1‑100 (MQ=255)

                                                              cTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTAGGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAAt                                      >  1:2039418/1‑100 (MQ=255)

                                                               tGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAAtt                                     >  2:3122539/1‑100 (MQ=255)

                                                               tGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAAt                                      <  2:3483037/99‑1 (MQ=255)

                                                                  gCGAAAGTAGGCGAGTCATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGcc                                  <  1:2234930/100‑1 (MQ=255)

                                                                  gCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGcc                                  <  2:1183356/100‑1 (MQ=255)

                                                                  gCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGcc                                  >  2:1781843/1‑100 (MQ=255)

                                                                   cGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGCACAGACAAACAGTTTCAAACGCTAAATTGCCt                                 <  2:3212012/100‑1 (MQ=255)

                                                                    gAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTg                                <  1:2337117/100‑1 (MQ=255)

                                                                     acaGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTATCAAACGCTAAATTGCCTGa                               <  1:2321354/98‑1 (MQ=255)

                                                                      aaGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGAt                              <  1:1739799/100‑1 (MQ=255)

                                                                       aGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATg                             <  2:3067970/100‑1 (MQ=255)

                                                                        gTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATgc                            <  2:3707396/100‑1 (MQ=255)

                                                                        gTAGGCGAGTAATTTTAAGTTTCGCTATGCCGCATGCGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATGGCCTGATgc                            <  1:1345451/100‑1 (MQ=255)

                                                                         tAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATgcg                           >  1:1052309/1‑100 (MQ=255)

                                                                           ggCGAGTAATTTTGAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCt                         >  1:2361274/1‑100 (MQ=255)

                                                                           ggCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCt                         >  2:3788335/1‑100 (MQ=255)

                                                                             cGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTAc                       <  1:111722/100‑1 (MQ=255)

                                                                             cGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTAc                       >  1:1536530/1‑100 (MQ=255)

                                                                              ngaaactgtttgtctgttcctTGCCGGATGCGACGTAAACGCCCCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACg                      <  1:2150200‑M1/79‑1 (MQ=255)

                                                                              gAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACg                      >  2:511923/1‑100 (MQ=255)

                                                                              gAGTAATTTTAACTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATACAGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATgcgat                         <  1:3196396/97‑3 (MQ=255)

                                                                               aGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGc                     >  1:2837450/1‑100 (MQ=255)

                                                                                  aaTTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCttn                  <  2:1724523/100‑2 (MQ=255)

                                                                                  aaTTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTa                  <  2:1814256/100‑1 (MQ=255)

                                                                                   aTTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTAt                 >  1:3803407/1‑100 (MQ=255)

                                                                                      tttgtctgttcctTGCCGGATGCGACGTAAACGCCCCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAg              >  2:2150210‑M1/14‑100 (MQ=255)

                                                                                      ttAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAg              <  2:377193/100‑1 (MQ=255)

                                                                                        aaGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGc            <  2:2347812/100‑1 (MQ=255)

                                                                                        aaGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGc            <  1:471416/100‑1 (MQ=255)

                                                                                          gTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCt          >  1:3371863/1‑100 (MQ=255)

                                                                                          gTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCt          >  2:3453295/1‑100 (MQ=255)

                                                                                           tttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGcc           <  2:478991/98‑1 (MQ=255)

                                                                                           tttCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTa         >  2:2614212/1‑100 (MQ=255)

                                                                                             tCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACa       <  2:2126331/100‑1 (MQ=255)

                                                                                             tCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACa       <  1:993513/100‑1 (MQ=255)

                                                                                               gCTATGCCGGATGGGGTGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACAt      <  2:249927/99‑1 (MQ=255)

                                                                                               gCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATg     <  2:3559088/100‑1 (MQ=255)

                                                                                                  aTGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGAtc  <  1:2462415/100‑1 (MQ=255)

GATAGCCGCCATTCTACGGCGGAAAAACCGGTATTTAACCGCACCGTTGGGCTGCGTGATACCTGGGCGAAAGTAGGCGAGTAATTTTAAGTTTCGCTATGCCGGATGGGGCGTTTACGTCGCATCCGGCAAGGAACAGACAAACAGTTTCAAACGCTAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATC  >  NC_000913/707674‑707871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.