| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3943543 | NA (NA) | 15 (0.130) | 6/156 | NT | 100% | intergenic (+33/‑161) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3943583 | 0 (0.000) | intergenic (+73/‑121) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
CACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAA > NC_000913/3943534‑3943682 | cACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGGTTGAGATATTaaggcaggtgactttccctcacaaaccagcaagtggcgtcccctagggga < 1:479109‑M2/100‑51 (MQ=255) gCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcga < 2:898293‑M2/100‑56 (MQ=255) gCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcga < 1:1696641‑M2/100‑56 (MQ=255) gCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcga < 1:3779581‑M2/100‑56 (MQ=255) gCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcga < 2:3326629‑M2/100‑56 (MQ=255) acctTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcga < 1:1697144‑M2/99‑56 (MQ=255) acctTAATATCTCAAAACTAATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcg < 1:2511208‑M2/98‑55 (MQ=255) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattagaa < 1:3646842‑M2/100‑57 (MQ=255) ccTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaa < 1:496060‑M2/100‑57 (MQ=255) cTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaac < 2:2867191‑M2/100‑58 (MQ=255) cTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaac < 2:877243‑M2/100‑58 (MQ=255) atatCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccct < 2:1287197‑M2/100‑62 (MQ=255) atatCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccct < 1:1059521‑M2/100‑62 (MQ=255) tctcAAAACTCATCTTCGGGTGATGTTTGAGATATTaaggtcggcgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgtt < 2:341048‑M2/100‑65 (MQ=255) cTTCGGGTGATGTTTGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaag > 2:1696650‑M2/1‑23 (MQ=255) tgagttgggagatattaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtg > 2:2218902‑M2/9‑16 (MQ=255) tttGAGATATTcaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgcacccctgttaccgccgtgaaagggcgg > 1:392779‑M2/1‑11 (MQ=255) tttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctg < 2:1798395‑M2/100‑90 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctagggtattcgaacccctgttaccgccgtgaaagggcggtgtcctgg > 2:834057‑M2/1‑10 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg < 2:2138332‑M2/100‑91 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg < 2:3162612‑M2/100‑91 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg < 2:2126343‑M2/100‑91 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg > 2:974798‑M2/1‑10 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg > 2:1203327‑M2/1‑10 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgg < 1:3727365‑M2/100‑91 (MQ=255) ttGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacacctgttaccgccgtgaaagggcggtgtcctgg < 1:775783‑M2/100‑91 (MQ=255) tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaccccctgttaccgccgtgaaagggcggtgtcctggg > 1:2021221‑M2/1‑9 (MQ=255) tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggg < 2:542934‑M2/100‑92 (MQ=255) tGAGATATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggg < 2:3494016‑M2/100‑92 (MQ=255) gagaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgcaagggcggtgtcctgggc < 1:119042‑M2/100‑93 (MQ=255) gagaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggc > 2:1135140‑M2/1‑8 (MQ=255) gagaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggc < 2:2959350‑M2/100‑93 (MQ=255) gagaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggc > 2:2492016‑M2/1‑8 (MQ=255) gagaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggc < 2:201158‑M2/100‑93 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcn > 2:777825‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 1:3183630‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 2:3005607‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc > 2:3568469‑M2/1‑7 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcc < 1:3364247‑M2/100‑94 (MQ=255) agaTATTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctggg < 1:2411734‑M2/98‑92 (MQ=255) atatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctc > 2:622680‑M2/1‑5 (MQ=255) tatTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct < 1:2471668‑M2/100‑97 (MQ=255) atTaaggtaggtgactttcactcccaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctct > 2:3330636‑M2/1‑3 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcttcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta > 1:2350701‑M2/1‑3 (MQ=255) atTaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctcta < 1:2425641‑M2/100‑98 (MQ=255) ttaaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggcttcgaacccctgtcaccgccgtgacagggcggtgtcctgggcctctag < 1:1515695‑M2/100‑99 (MQ=255) taaggcaggtgactttcactcacaaaccagcaagtggcgtcccctaggggattcgaacccctgttaccgccgtgaaagggcggtgtcctgggcctctaga < 1:34190‑M2/100‑100 (MQ=255) | CACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAA > NC_000913/3943534‑3943682 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |