| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3943635 | NA (NA) | 22 (0.180) | 13/164 | NT | 53.2% | intergenic (+125/‑69) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 4037446 | 21 (0.160) | intergenic (+111/‑73) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
ATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGG > NC_000913/4037347‑4037545 | aTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC > 1:1111244‑M2/1‑100 (MQ=255)aTTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAAC > 2:1443078‑M2/1‑100 (MQ=255) tACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcag > 1:1221908‑M2/1‑87 (MQ=255) tACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcag > 2:1326015‑M2/1‑87 (MQ=255) tACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcag > 1:204080‑M2/1‑87 (MQ=255) aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt > 2:2199800‑M2/1‑86 (MQ=255) aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagt > 1:707317‑M2/1‑86 (MQ=255) aCTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACgttcgttgttcagt > 2:3744331‑M2/1‑86 (MQ=255) cTTCAGAGTGTACCTTCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtg > 2:3760465‑M2/1‑85 (MQ=255) cTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtg > 2:1629551‑M2/1‑85 (MQ=255) cTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcattgttcagtg > 1:1298826‑M2/1‑85 (MQ=255) ttCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACTCTGAACAACtttcgttgttcagtg > 1:1332901‑M2/1‑84 (MQ=255) tCAGAGTTTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACttttgttgttcagtgt > 1:2972480‑M2/1‑83 (MQ=255) cttccgatcttgcaaaggctcACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttc > 2:3815667‑M2/11‑81 (MQ=255) gagTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttca > 1:475399‑M2/1‑80 (MQ=255) gtgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcattgttcagtgtttcaat > 2:2764229‑M2/1‑78 (MQ=255) tgtACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcaatt > 2:332593‑M2/1‑77 (MQ=255) tGCAAAGGCTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACtttcgttgttcagtgtttcagatcggaag < 1:3815642‑M2/100‑30 (MQ=255) gTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAaca > 2:304958/1‑100 (MQ=11) ttCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTAGTGAGTCTCTCAAATTTTCGCAacac > 1:956959/1‑100 (MQ=14) aCTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat > 2:1682884/1‑100 (MQ=32) cTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg > 1:1326860/1‑100 (MQ=33) gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat > 2:1349668/1‑100 (MQ=33) gCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatgat > 2:1071069/1‑100 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 1:376403/100‑1 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 2:869469/100‑1 (MQ=32) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 2:3543018/100‑1 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 1:1925820/100‑1 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 2:1101972/100‑1 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 1:3435785/100‑1 (MQ=33) cGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGatgatg < 1:49837/100‑1 (MQ=33) aaGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGaa < 2:3734391/100‑1 (MQ=33) aGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAAt > 1:74684/1‑100 (MQ=32) aGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAAt > 2:599890/1‑100 (MQ=32) aGTTTTGCTCTTTAAAAATCTGGATCAAGATGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGAtgatga < 2:1269827/98‑1 (MQ=17) gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc < 2:3163536/100‑1 (MQ=31) gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc > 1:474504/1‑100 (MQ=31) gTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATc < 2:1765690/100‑1 (MQ=31) gTTTTGCTCTTCAAAAATCTGCATCAAGCTGAAACTTGAAACACTGAAAAACGAAAGTTGTTCGTTAGGCTCTCAAAGATTCGAAACACGATGATGAATc < 1:1517359/100‑1 (MQ=11) ttAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaatagcaaaactt < 1:513209‑M2/100‑59 (MQ=255) gATCAAGCTGAAAATTGAAACACTGAACAACtctcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcac < 1:1404073‑M2/100‑70 (MQ=255) tGAAAATTGAAACAATGAACAACtctcgttgttcagtgtttcaattttcagtttggtccagatttttaaagagcaaatatctcaaacatcacccgaaga > 2:1314162‑M2/1‑23 (MQ=255) aaaTTGAAACACTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgag < 1:2834990‑M2/100‑81 (MQ=255) ttGAAACACTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttt < 2:2018457‑M2/100‑84 (MQ=255) aaCACTGAACAACgagagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgag < 2:125695‑M2/100‑88 (MQ=255) acacTGAACAACgaaagttgttcggtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgaga < 1:1963681‑M2/100‑89 (MQ=255) acacTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgaga < 2:2178190‑M2/100‑89 (MQ=255) cacTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagat < 2:1934524‑M2/100‑90 (MQ=255) cacTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagat < 1:1725885‑M2/100‑90 (MQ=255) cTGAACAACgaaagttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatat < 1:2689260‑M2/100‑92 (MQ=255) gAACAACtttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatatta > 2:1826469‑M2/1‑7 (MQ=255) aacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagctgagttttgagatattaa < 2:1650315‑M2/100‑95 (MQ=255) aacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaa < 2:2458175‑M2/100‑95 (MQ=255) caactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaagg > 1:845795‑M2/1‑4 (MQ=255) caactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaaaatcacccgaagatgagttttgagatattaag < 1:2318283‑M2/99‑96 (MQ=255) caactttcgttgttcagtgtttcaatttgcagcttgatccagatttttaaagagcaaatatctcaaacagcacccgaagatgagttttgagatattaagg > 2:1113779‑M2/1‑4 (MQ=255) aactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggc > 2:2411019‑M2/1‑3 (MQ=255) actttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggca > 1:428985‑M2/1‑2 (MQ=255) actttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggca > 1:1442247‑M2/1‑2 (MQ=255) actttcgttgttcagtgtttaaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggca < 1:2322000‑M2/100‑99 (MQ=255) ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag < 1:1881549‑M2/100‑100 (MQ=255) ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag < 1:3297926‑M2/100‑100 (MQ=255) ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag < 2:1621016‑M2/100‑100 (MQ=255) ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag > 1:501521‑M2/1‑1 (MQ=255) ctttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttttgagatattaaggcag > 1:3112639‑M2/1‑1 (MQ=255) | ATTAAATAAAAAATACTTCAGAGTGTACCTGCAAAGGTTCACTGCGAAGTTTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATGATGAATCGAAAGAAACATCTTCGGGTTGTGAGGTTAAGCGACTAAGCGTACACGGTGG > NC_000913/4037347‑4037545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |