New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2304654 =	NA (NA)	8 (0.060)	3/164	NT	100%	noncoding (238/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	2304670 =	0 (0.000)					noncoding (254/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences

GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAG  >  NC_000913/2304571‑2304769                                                                                                    |                                                                                                    gtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgcctta                                                                                                     <  2:582218‑M2/1‑1 (MQ=255) gtggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgcctta                                                                                                     <  1:3096858‑M2/1‑1 (MQ=255)  tggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttAt                                                                                                    <  2:1066372‑M2/2‑1 (MQ=255)  tggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttAt                                                                                                    >  2:793275‑M2/99‑100 (MQ=255)  tggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttAt                                                                                                    >  2:3308084‑M2/99‑100 (MQ=255)  tggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttAt                                                                                                    >  2:20059‑M2/99‑100 (MQ=255)  tggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttAt                                                                                                    >  2:176080‑M2/99‑100 (MQ=255)  cccGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCAt                                                                                                    >  2:2986681/1‑100 (MQ=11)   gtagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                   >  2:2587252‑M2/98‑100 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                   <  2:3560979‑M2/3‑1 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                   >  2:3526550‑M2/98‑100 (MQ=255)   ggagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATc                                                                                                   >  2:142254‑M2/98‑100 (MQ=255)    gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                  <  2:2554505‑M2/4‑1 (MQ=255)    gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                  <  2:103035‑M2/4‑1 (MQ=255)    gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                  >  2:1969831‑M2/97‑100 (MQ=255)    gagcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                  >  2:2024457‑M2/97‑100 (MQ=255)     ggcacttcacagcggtctaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                 <  1:1001934‑M2/5‑1 (MQ=255)     agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                 <  2:2804409‑M2/5‑1 (MQ=255)     agcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                 >  1:1546561‑M2/96‑100 (MQ=255)     agcacttcacagcggtgtaggcctgagaagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgcctta                                                                                                     <  1:821004‑M2/1‑1 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttatccaa                                                                                                >  2:101540‑M2/95‑98 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttGTCCGa                                                                                                >  2:2671189‑M2/95‑100 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa                                                                                                >  2:3045697‑M2/95‑100 (MQ=255)      gcacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggctcgggcgagcgatgtcggatgcggcggaaccgccctATCCGa                                                                                                >  1:896050‑M2/95‑100 (MQ=255)      gcacgtcgcagctgtggaaggctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGa                                                                                                <  1:854158‑M2/6‑1 (MQ=255)      gcacgtcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCg                                                                                                 <  1:2360420‑M2/5‑1 (MQ=255)       cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc                                                                                               <  2:3045674‑M2/7‑1 (MQ=255)       cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc                                                                                               <  2:2168421‑M2/7‑1 (MQ=255)       cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc                                                                                               <  2:509440‑M2/7‑1 (MQ=255)       cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGAc                                                                                               <  2:2596409‑M2/7‑1 (MQ=255)       cacttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatggcggatgcggcgtaaccgccttATCCg                                                                                                 <  2:1439778‑M2/5‑1 (MQ=255)        agttgactgcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATCCGacc                                                                                              <  2:3798202‑M2/8‑2 (MQ=255)        acttcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaacccccttATCCGa                                                                                                >  1:336457‑M2/93‑98 (MQ=255)        acctcacagcggtgtaggcctgataagacgcgccagcgtcgcatcaggcaaccggcttgggcgttagatgtcggatgcggcgtaaccgccttATcc                                                                                                  <  1:3430438‑M2/4‑1 (MQ=255)        acatcacagcggtttaggcctgataagacgcgccagcgtcacatcaggcaaccggcttgggcgttagatgtcggaggcggcgtaaccgccttATCCGAc                                                                                               <  2:3231961‑M2/7‑1 (MQ=255)                                                                     cgttagatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTGCACCGCt                                 >  2:369844‑M2/32‑100 (MQ=255)                                                                     cgttagatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCt                                 >  2:2709844‑M2/32‑100 (MQ=255)                                                                          gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCtgtg                              >  1:455122‑M2/27‑98 (MQ=255)                                                                          gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                            >  2:897506‑M2/27‑100 (MQ=255)                                                                          gatgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCCGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACCCCCCTCTGaa                            >  1:1775499‑M2/27‑100 (MQ=255)                                                                          gatgtcggatgcggcgtaaccgccttATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTGTCAGGCCTACACCGCtgtg                              >  1:3511596‑M2/27‑98 (MQ=255)                                                                           atgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGaa                            >  1:874269‑M2/26‑99 (MQ=255)                                                                           atgtcggatgcggcgtaaccgccttATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAg                           >  2:535143‑M2/26‑100 (MQ=255)                                                                                                    ATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAg  <  1:2554493‑M2/100‑1 (MQ=255)                                                                                                    ATCCGACATCCAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAg  <  1:1004299‑M2/100‑1 (MQ=255)                                                                                                    |                                                                                                    GCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAG  >  NC_000913/2304571‑2304769

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.