| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,984 | T→G | 35.8% | intergenic (‑194/+114) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,984 | 0 | T | G | 35.8% | 346.9 / 290.4 | 242 | intergenic (‑194/+114) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (78/77); new base G (74/12); total (153/89) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.57e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.69e-02 | |||||||||||
Only 100 of 246 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705886‑3706083 | tgctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCtt < 2:2874235/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:721500/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2170085/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:1994346/1‑100 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:1952097/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc < 2:830180/100‑1 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:590897/1‑100 (MQ=255) ccGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg < 1:3371274/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 2:2024779/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCgg < 2:2199478/100‑1 (MQ=37) ggATGGCGCTGCACGCAGAGGCACAGCGCTACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:367745/100‑1 (MQ=25) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 2:654093/100‑1 (MQ=37) gATGGCGCGGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTGTGGTTATGCCGGATGCGGCGTTATCGCCTTATCCGGcc < 1:1279210/100‑1 (MQ=25) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATa < 1:1804698/100‑1 (MQ=37) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGCATa < 2:3423502/100‑1 (MQ=37) gcgcTGCACGCAGAGGCACAGCGTCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑a < 1:511058/100‑1 (MQ=255) gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCAGCCTAC‑a > 1:363104/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCTGCGTTAACGCCTTATCCGGCCTAC‑aaa > 1:935600/1‑100 (MQ=255) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑aaa > 2:3026780/1‑100 (MQ=255) gCACGCAGAGGCACGGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATc > 1:2716316/1‑100 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 2:2958412/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 2:573253/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 2:2630196/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg < 1:2450053/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:1254493/100‑1 (MQ=255) gagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑caa > 1:798010/1‑100 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCa > 1:2202194/1‑100 (MQ=255) caGCGTCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAAt < 2:1266067/100‑1 (MQ=255) aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATa < 2:1920368/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACAtt < 2:2182920/100‑1 (MQ=255) ccACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGACGGATGCGGCGTTAACGCCTTATTCGGCCTAC‑AAAATCGTGC‑AAATTCAATACAtt > 1:1894181/1‑100 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTTCGTTTTGTTTATGCCGGATGCGGCGTTAACGCCTTACCCGGCCTAC‑TAAATCGTGC‑AAATTCCATACAtgg < 1:1386834/100‑3 (MQ=17) aCCGGGTATACACCTTGTTGACAAAGTCCGCTTTGTTTATCTCGGATGCGTCCTTAACGCCTTATCCGTCCTAC‑AAAATCGTGC‑AAATTCATTACATTGc < 1:313699/100‑1 (MQ=17) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑At‑ttt > 1:2480225/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTc < 1:3467121/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑g < 2:1989021/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑g < 2:2898213/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑g < 1:2800359/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑g < 2:492490/100‑1 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAgg < 1:1917468/100‑1 (MQ=255) ttgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAgg > 1:3510846/1‑100 (MQ=255) tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGc < 2:2242086/100‑1 (MQ=255) gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGcc > 2:161064/1‑100 (MQ=255) aCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGAt < 2:1501042/100‑1 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATa > 1:3196531/1‑100 (MQ=255) cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATAGTGC‑AAGTTCACTACATTGC‑‑AGA‑CA‑CTTC‑‑GTAGGCCTg > 2:3182428/1‑97 (MQ=14) aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGc < 1:3751427/100‑1 (MQ=255) tGCGCGTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCgg < 1:1307701/100‑1 (MQ=255) cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAg < 1:2709829/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGTCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc > 1:2611423/1‑100 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGTTAAGCg > 2:2423031/1‑97 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGa < 1:2325865/98‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc > 2:2063265/1‑100 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:1240099/100‑1 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:838261/100‑1 (MQ=255) tttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAGTCGTAT‑AAATTCAATGTATTGC‑‑AGT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCAt > 2:2698219/8‑100 (MQ=21) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGC‑AAATTCAATATATTGC‑‑‑‑A‑AT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATc > 2:1720692/7‑100 (MQ=18) ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:2716330/100‑1 (MQ=255) nggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑‑ATACCGCGC‑AAATTCAATATATTGCGGAGA‑AA‑AT‑‑‑‑GTAGGCCTGATAAGCGTAGCGCGTCAGGct > 1:2043341/3‑99 (MQ=18) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATCGCTT‑AAATTCAATATATTGC‑‑ACC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:1429532/3‑99 (MQ=18) aTGCCGGATGCGGCGTTAACGCCGTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 1:1470/99‑1 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa < 2:406035/100‑1 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 1:1379054/1‑100 (MQ=255) tGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCa > 2:1530808/1‑100 (MQ=255) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCATGC‑AAATTCAATATATTGC‑‑AGA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:386876/2‑100 (MQ=14) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAATCTTGC‑CAATTCAATATATTGC‑‑AGG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1389603/2‑100 (MQ=18) gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:1460892/1‑100 (MQ=255) gCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCC‑AAATTCAATATATTGC‑‑AGA‑AA‑TCAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:2975010/1‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGC‑AAATTCAATAAATTGC‑‑A‑A‑AT‑CAACATGTAGGCCGGATAAGCGCAGCGCATCAGGCa > 1:2571710/1‑100 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACCTTGC‑TAATTCAATATATTGC‑‑AGG‑GA‑CTAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCag > 1:1217899/1‑99 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAACCGTGC‑TAATTCAATATATTGC‑‑AGA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:2031860/9‑98 (MQ=17) ccggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGC‑CAATTCAATATATTGC‑‑AGG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:3307202/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATTGTGT‑AAATTCAATAAATTGA‑‑TCG‑AT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 2:105779/9‑98 (MQ=18) ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCGCTT‑AAATTCAATATATTGC‑‑ACC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:1152417/9‑98 (MQ=21) ccggataaggcgTTAACGCCGCATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1799584/9‑100 (MQ=18) ccGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGT‑AAATTCAATAAATTGA‑‑TCG‑AT‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:3438258/1‑98 (MQ=18) cGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGATCGCATCAGGCAtt > 2:1094665/1‑99 (MQ=255) ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGC‑AAATTCAACAAATTGC‑‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 1:1032296/7‑98 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGC‑CAATTCAATATATTGC‑‑AGG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:2235449/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGA‑AAATTCAATACATTGC‑‑AAG‑AT‑TTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgct > 2:732943/7‑96 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGA‑AAATTCAATATATTGC‑‑AGG‑AG‑CTGA‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:868898/7‑100 (MQ=17) ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAACATGC‑AAATTCAATAGATTGC‑‑AGAGAT‑TAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaatag > 1:2915465/7‑96 (MQ=17) gataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAGCATGC‑AAATTCAATATATTGC‑‑AGA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCCGGCAgttt > 1:1774301/6‑99 (MQ=17) ataaggcgTTCACGCCGCATCCGGCCTAC‑AAGATCGTGC‑AAATTCAATATATTGC‑‑ATG‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTtttg < 2:2145583/96‑1 (MQ=17) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2341624/100‑1 (MQ=255) aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:3025232/100‑1 (MQ=255) cggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcct < 1:3742334/100‑1 (MQ=255) ggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCACGC‑AAACTCAATATATTGC‑‑AGAGAT‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAatttagcgtt > 2:881092/1‑94 (MQ=17) ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:3596102/1‑100 (MQ=255) gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 2:170255/1‑100 (MQ=255) ttAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgcn < 1:281638/100‑2 (MQ=255) aaCGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:1838723/1‑100 (MQ=255) aCGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 2:2451783/100‑1 (MQ=255) aCGCCTTATCCGGACTAC‑AAAATCGTGA‑AAATTAAATACATTGC‑‑AGC‑AT‑TTTA‑‑GTAGGAGTGATAAGAGGAGCGCATCAGGCATTtttgcctttggtatc > 1:2364465/1‑95 (MQ=18) ccccTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCCTCa > 2:2576738/3‑100 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa > 1:2086127/1‑100 (MQ=255) cGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGACTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa > 1:3549058/1‑100 (MQ=255) ccTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 2:2224573/1‑100 (MQ=255) cTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc < 2:1773257/100‑1 (MQ=255) ttATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 2:1311195/100‑1 (MQ=255) | TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGC‑AAATTCAATACATTGC‑‑AGA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCT > NC_000913/3705886‑3706083 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |