Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,781,152	0	A	G	20.4%	169.0 / 20.1	88	intergenic (+135/‑63)	lldD/trmL	L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (50/20);  new base G (1/17);  total (51/37)
Fisher's exact test for biased strand distribution p-value = 3.43e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCG  >  NC_000913/3781053‑3781250                                                                                                     |                                                                                                    gggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGa                                                                                                     >  1:1066072/1‑100 (MQ=255) gggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGa                                                                                                     >  2:1055004/1‑100 (MQ=255) gggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGa                                                                                                     >  1:1152569/1‑100 (MQ=255)    agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAggg                                                                                                  <  2:1951707/100‑1 (MQ=255)       ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑aa                                                                                              >  2:2136249/1‑100 (MQ=255)         ggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑aaaa                                                                                            >  1:840052/1‑100 (MQ=255)            ccGTTCGGCGCTGTATGTTCTCCCTCACTCTGAAACGACACCGCGCTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGc                                                                                         <  1:1826508/100‑1 (MQ=255)            ccGTTCGGCGCTGTATGTCCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGc                                                                                         <  1:844428/100‑1 (MQ=255)            ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGc                                                                                         <  1:1052518/100‑1 (MQ=255)             cGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGcc                                                                                        >  2:2129567/1‑100 (MQ=255)              gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCg                                                                                       >  2:746556/1‑100 (MQ=255)              gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCg                                                                                       >  1:1066082/1‑100 (MQ=255)                 cGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCAc                                                                                    >  2:1369392/1‑100 (MQ=255)                 cGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCAc                                                                                    >  2:1368981/1‑100 (MQ=255)                   gcgcTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTg                                                                                  >  1:1094928/1‑100 (MQ=255)                     gcTGCATGTCCTCCCCCCCTCTGAACCAACACCCCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGCGAGGGCC‑GGGGAGAGAGA‑AAAAGGCCGCGCTGc                                                                                 <  2:1634964/99‑1 (MQ=255)                      cTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTc                                                                               >  1:683745/1‑100 (MQ=255)                        gtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTTCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCAc                                                                             >  2:656104/1‑100 (MQ=255)                        gtatgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCAc                                                                             >  1:1171862/1‑100 (MQ=255)                          atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCa                                                                           >  1:61317/1‑100 (MQ=255)                          atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCa                                                                           >  1:495791/1‑100 (MQ=255)                           tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGTGTGAGGGG‑AAAAGGCCGCACTGCTCACCaa                                                                          >  2:1255364/1‑100 (MQ=255)                           tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCaa                                                                          >  1:764555/1‑100 (MQ=255)                            gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAAt                                                                         >  2:2114585/1‑100 (MQ=255)                               cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAAtttt                                                                      >  1:458676/1‑100 (MQ=255)                               cTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAAtttt                                                                      >  1:1807038/1‑100 (MQ=255)                                 cctccACCCTGAACCGACGCCGGACTTGTTTTTCCCCCCCAGCGCCGCCGGGGAGGGGGCC‑GGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTc                                                                     <  2:144065/95‑1 (MQ=255)                                 cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCTCTCTCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                                    >  2:944006/1‑100 (MQ=255)                                 cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                                    >  2:1105174/1‑100 (MQ=255)                                 cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                                    >  1:1946670/1‑100 (MQ=255)                                 cccTCACTCTGAAACGACACCGAACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCt                                                                    >  2:1314345/1‑100 (MQ=255)                                  ccacactgggAAACGACCCCGCTCTCTTTTTTTCCCCTACACCCGTAGGGGGAGTGGTCC‑GGGGGGAGGGG‑AAAAGGCCGCACTGCGCACCAATTTTCTg                                                                   <  1:410363/91‑1 (MQ=255)                                  ccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCGCTCTCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTg                                                                   >  1:1587807/1‑100 (MQ=255)                                   ccccctggaaaaCGACCCCCCCCT‑TTTTTTTCCCCCCCCCCCCCCCGGGGGGGGGGGC‑GGGGGGGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                                  <  1:1723584/91‑1 (MQ=255)                                   cTCACTCTGAAACGACACCGCCCTCTTTTTTTCCCCCTGGCCCCTCCGGGGAGAGGGCG‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGc                                                                  <  2:495788/100‑1 (MQ=255)                                       ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                              >  1:1308497/1‑100 (MQ=255)                                       ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                              >  1:1460728/1‑100 (MQ=255)                                       ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                              >  1:639826/1‑100 (MQ=255)                                       ctctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGCGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                              >  1:1102601/1‑100 (MQ=255)                                         ctGAAACGACACCGCACTCTTTTTTTTTTTTTTTCACCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑ATAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt                                                            >  2:804727/1‑100 (MQ=255)                                         ctGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATTCt                                                            >  1:733135/1‑100 (MQ=255)                                            aagcGACACCGCACTCTTTTTTTCCCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcc                                                         <  2:438752/97‑1 (MQ=255)                                               cccccccGCACTTTTTTTTCCCCCCCCCCCCCTCGGGGGAGGGGGCG‑GGGGGGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                       <  1:2129582/94‑1 (MQ=255)                                                  ccccGCCCTCTTTTTTCCTCCCCCGCCCCGCGGGGGGGGGGGCG‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc                                                    <  2:1603970/97‑1 (MQ=255)                                                  cacCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCa                                                   >  2:873691/1‑100 (MQ=255)                                                   cccGCTCTCTTTTTTTCCCCCCCGCCCCTGCGGGGGAGGGGCC‑GGGTGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCg                                                     <  1:1314354/96‑1 (MQ=255)                                                   cccGCCCTCTTTTTTTCTCCCCCGCCCCTCCGGGGAGGGGCCC‑GGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                  <  1:2017037/99‑1 (MQ=255)                                                    ccgctttttttttttCCCCCCCCCCCCCCCGGGGGGGGGGGCGGGGGGGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcc                                                         <  1:1127736/85‑1 (MQ=255)                                                    ccGCACTC‑TTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa                                                >  1:1076010/1‑100 (MQ=255)                                                     cGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTa                                                >  1:1253197/1‑100 (MQ=255)                                                      gCACTCTTTTTTTTTTTTTCTCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa                                               >  2:1571270/1‑100 (MQ=255)                                                       cgttgttttttgCCCCCGCCCCCCTCGGGGGGGGGGGCG‑GGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                  <  2:1308488/91‑1 (MQ=255)                                                         ctctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            >  2:377381/1‑100 (MQ=255)                                                            tttttttCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                                         >  1:1716936/1‑100 (MQ=255)                                                            tttttttCCCCCCCCCCCCTCCGGGGGGGGGGCC‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggg                                            <  2:61315/97‑1 (MQ=255)                                                             ttttttCCCCCCCCCCCCCCCGGGGGAGGGGCC‑GGGGGGGGGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGc                                         <  1:746563/100‑1 (MQ=255)                                                             ctcttccgatcTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCa                                        <  1:1803910/90‑1 (MQ=255)                                                              tttttCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                                       >  2:1778398/1‑100 (MQ=255)                                                               ttttCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                                      >  2:2127257/1‑100 (MQ=255)                                                                   ctcCCTCGCCCCCCGGGGGAGAGGGCC‑GGGGGGAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                  <  2:1094921/100‑1 (MQ=255)                                                                   ccccccccccccccGGGGGAGGGGGCG‑GGGTCGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                  <  1:2255917/92‑1 (MQ=255)                                                                     ccccccccccTCCGGGGAGGGGGCC‑GGGGTGAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                <  2:1152562/94‑1 (MQ=255)                                                                     cccTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCATTTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                >  2:1587898/1‑100 (MQ=255)                                                                     cccTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                >  2:2089839/1‑100 (MQ=255)                                                                     cccTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                >  1:612635/1‑100 (MQ=255)                                                                      ccTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                               >  1:1354663/1‑100 (MQ=255)                                                                      ccTCCCCCCCCGGGGGAGGGGCCG‑GGGGTGAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaa                               <  1:1368990/100‑1 (MQ=255)                                                                       cTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAgatcggaaga                              >  2:1477648/1‑91 (MQ=255)                                                                         cgcgccgcgggggggCGGGCG‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                             <  1:2254686/90‑1 (MQ=255)                                                                         cGCCCCCCGGGGGGGGGGGCC‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                              <  2:111274/98‑1 (MQ=255)                                                                          gCCCCTGCGGGGGGGGGGCC‑GGGGGGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                                <  2:1295481/95‑1 (MQ=255)                                                                          ctcccTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                           <  2:1047580/98‑1 (MQ=255)                                                                            cccTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAtag                         >  1:1047587/1‑98 (MQ=255)                                                                                 cGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt                    >  1:1304543/1‑100 (MQ=255)                                                                                  ggggggAGGGCG‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTAc                      <  2:1102594/97‑1 (MQ=255)                                                                                  ggggAGGGGGCG‑GGGGTGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACttt                   <  2:1076003/100‑1 (MQ=255)                                                                                   ggaggggggCG‑GGGGGGGGGGG‑AAGAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTa                  <  1:1307212/94‑1 (MQ=255)                                                                                    ggggggggCG‑GGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc                 <  1:1587907/95‑1 (MQ=255)                                                                                      gaggggCCGGGGGTGGGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACg                <  1:1105181/97‑1 (MQ=255)                                                                                      cgagGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACg                >  1:772365/2‑99 (MQ=255)                                                                                       gggggCG‑GGGGGGGGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGa               <  1:2233015/97‑1 (MQ=255)                                                                                       gagGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGaa              >  2:421740/1‑100 (MQ=255)                                                                                         gggCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAAcc            <  2:1607441/100‑1 (MQ=255)                                                                                           gCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCTCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg          >  2:986050/1‑100 (MQ=255)                                                                                           gCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg          >  2:1005344/1‑100 (MQ=255)                                                                                            cc‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa         >  1:1788909/1‑100 (MQ=255)                                                                                            cc‑GGGGTGAGGGA‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGa         <  1:2145840/100‑1 (MQ=255)                                                                                               ggggggAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaaa       <  1:377384/100‑1 (MQ=255)                                                                                               ggggTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaaa       >  2:2235293/1‑100 (MQ=255)                                                                                               ggggTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGaaa       >  1:516742/1‑100 (MQ=255)                                                                                                gggTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAt      <  1:1778407/100‑1 (MQ=255)                                                                                                     aGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTTAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCg  <  2:1253190/99‑1 (MQ=255)                                                                                                     |                                                                                                    GGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCC‑GGGGTGAGGGG‑AAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTCCG  >  NC_000913/3781053‑3781250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑