Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 175,150:1 +G 17.1% coding (44/1422 nt) clcA → H(+)/Cl(‑) exchange transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913175,1491.G17.1% 640.3 / 155.2 205coding (43/1422 nt)clcAH(+)/Cl(‑) exchange transporter
Reads supporting (aligned to +/- strand):  ref base . (95/75);  new base G (17/18);  total (112/93)
Fisher's exact test for biased strand distribution p-value = 4.60e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.20e-02

Only 100 of 220 total aligned reads displayed.

GGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGC  >  NC_000913/175050‑175248
                                                                                                    |                                                                                                   
ggAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCcgcgc                                                                                                      >  2:706801/1‑100 (MQ=255)
   aCGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGcgcgcggcc                                                                                                 <  2:816384/100‑4 (MQ=255)
     gTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTg                                                                                                <  1:447787/100‑1 (MQ=255)
      tGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGc                                                                                               >  2:2536227/1‑100 (MQ=255)
        cGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAGCTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCg                                                                                              <  2:1126349/99‑1 (MQ=255)
        cGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATCCTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGa                                                                                             <  2:3230288/100‑1 (MQ=255)
        cGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGa                                                                                             <  2:3053273/100‑1 (MQ=255)
        cGAGTAAAATGCCGTCATCTTATATGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAACCAACGCACGCCGCTCGcc                                                                                                  >  2:3194584/1‑95 (MQ=255)
         gAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGcgcgcggccagatcg                                                                                           >  1:1559059/1‑91 (MQ=255)
         gAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCGCGCGGCCTGCggt                                                                                            <  2:3950197/100‑3 (MQ=255)
         gAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCGCGCGGCCTGCggt                                                                                            <  2:2549503/100‑3 (MQ=255)
         gAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTACCTCTTTAGAAACACCGCAGGCCGCCCGCCTGCGAc                                                                                            >  2:1237884/1‑100 (MQ=255)
          atctaaaTGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACg                                                                                           <  1:1160937/96‑1 (MQ=255)
          aGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACg                                                                                           <  2:573671/100‑1 (MQ=255)
          aGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCGCGCGGCCTGCggtg                                                                                           <  1:3116217/100‑4 (MQ=255)
             aaaaTGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAg                                                                                        <  2:1079372/100‑1 (MQ=255)
              aaaTGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACgagat                                                                                       >  2:1160928/1‑96 (MQ=255)
               aaTGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCGCGCGGCCTGCggtgtttct                                                                                      <  2:1213547/100‑9 (MQ=38)
               aaTGCCGTCAGCTTAGTTGTATGACCAATAAGTGAACAGTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGACGCGCGCCTGCGACGCAGAc                                                                                      >  2:428539/1‑100 (MQ=255)
                attccttcatcaTCTTTGTATGACCAACAAGTGATCATTGGATGCAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACa                                                                                     <  2:518791/94‑1 (MQ=255)
                  tccGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAAc                                                                                   <  2:3149051/99‑1 (MQ=255)
                    cGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTg                                                                                 <  1:2742880/100‑1 (MQ=255)
                      tCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGAt                                                                               >  1:343374/1‑100 (MQ=255)
                       cATCTTATTTGTAAGACCAATAAGTGATCATTGGATGACAACTGATACTCCCTCTTGAGAAACACCGCAGGCCGAGCGCCTGCGACGCAGACAACTGAtt                                                                              >  2:2434678/1‑100 (MQ=255)
                         tCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCg                                                                            >  2:3118424/1‑100 (MQ=255)
                          cTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGc                                                                           >  2:1552928/1‑100 (MQ=255)
                           ttATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGcc                                                                          >  1:460472/1‑100 (MQ=255)
                            tagttGTATGACCAATAGGTGTTAATTGGATGAAAACTGATACTCCCTCTTTCGAGACACCGCAGGCCGCGGGACTGCGACGCAGACAACTGATTCGCCa                                                                         >  2:2719807/4‑100 (MQ=255)
                            tATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCa                                                                         <  1:480935/100‑1 (MQ=255)
                            tATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCa                                                                         <  1:863684/100‑1 (MQ=255)
                                tGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAActt                                                                     >  1:2029466/1‑100 (MQ=255)
                                  tATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAActtct                                                                   >  1:3188609/1‑100 (MQ=255)
                                   aTGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAActtctt                                                                  <  1:807924/100‑1 (MQ=255)
                                    tGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTg                                                                 >  1:3234979/1‑100 (MQ=255)
                                     gACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGa                                                                <  1:1395596/100‑1 (MQ=255)
                                     gACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGa                                                                >  1:2767159/1‑100 (MQ=255)
                                      aCCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTTGCCAActtctcg                                                                 >  2:1757364/1‑96 (MQ=255)
                                      aCCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAg                                                               <  1:3350778/100‑1 (MQ=255)
                                      aCCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAg                                                               <  1:2736036/100‑1 (MQ=255)
                                       ccAATACGTGATCATTGGATGCACACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAg                                                               <  2:1540718/99‑1 (MQ=255)
                                       ccAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAgc                                                              >  2:3598330/1‑100 (MQ=255)
                                         aaTAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAgcgc                                                            >  1:1285785/1‑100 (MQ=255)
                                         aaTAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAgcgc                                                            <  1:59983/100‑1 (MQ=255)
                                              gTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATaa                                                       >  1:2301207/1‑100 (MQ=255)
                                              gTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATaa                                                       >  1:3855685/1‑100 (MQ=255)
                                               tGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATaaa                                                      >  1:2825544/1‑100 (MQ=255)
                                                gATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATaaaa                                                     >  2:3102484/1‑100 (MQ=255)
                                                   cATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAAccc                                                  >  1:2702686/1‑100 (MQ=255)
                                                     ttGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCg                                                <  1:2358962/100‑1 (MQ=255)
                                                      tGGATGAACACTGATACTCCCTCTTTCGAAACACCGCACGCCTCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAAcccc                                                 <  2:3346105/98‑1 (MQ=255)
                                                      tGGATGAAACCTGATAGTCCCTCTTTAGGAACACCGCAGGCCGCGCGCCTGCGACGCCGAGCACTAATTCGCCGACTTCTTGAGCGCGCTGACAcccact                                               >  2:1941862/1‑97 (MQ=255)
                                                       ggATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGtt                                              >  2:1848936/1‑100 (MQ=255)
                                                       ggATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGtt                                              >  1:412889/1‑100 (MQ=255)
                                                       ggATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGtt                                              >  1:2971118/1‑100 (MQ=255)
                                                          tGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGc                                           <  2:2931015/100‑1 (MQ=255)
                                                            aaaaCTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCa                                         >  2:1278248/1‑100 (MQ=255)
                                                            aaaaCTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCa                                         <  2:1406432/100‑1 (MQ=255)
                                                               aCTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCAttt                                      <  1:2277840/100‑1 (MQ=255)
                                                               aCTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCAttt                                      >  1:1068868/1‑100 (MQ=255)
                                                                 tGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTg                                    <  1:3549476/100‑1 (MQ=255)
                                                                  gATCCTTCCTCTTTAGATACACCGCAGGCCGCGGGCCTGCGACGCACGCAACTGATTCGACAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTg                                    <  1:2618328/99‑1 (MQ=255)
                                                                    tACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGttt                                 <  2:1068861/100‑1 (MQ=255)
                                                                     aCTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTa                                <  1:1734510/100‑1 (MQ=255)
                                                                       tCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATg                              <  1:3591328/100‑1 (MQ=255)
                                                                         ccTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggc                            <  2:381718/100‑1 (MQ=255)
                                                                         ccTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggc                            >  1:965998/1‑100 (MQ=255)
                                                                         ccTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggc                            <  1:1456198/100‑1 (MQ=255)
                                                                         ccTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggc                            >  1:3295519/1‑100 (MQ=255)
                                                                          ctctTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggcg                           >  2:3708089/1‑100 (MQ=255)
                                                                          ctctTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggcg                           >  1:2461999/1‑100 (MQ=255)
                                                                          ctctTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggcg                           >  1:3713785/1‑100 (MQ=255)
                                                                           tctTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggcgg                          <  2:630412/100‑1 (MQ=255)
                                                                            ctTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGCCCACTGCTTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggcggc                         >  2:1662691/1‑100 (MQ=255)
                                                                            ctTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggcggc                         >  2:787300/1‑100 (MQ=255)
                                                                            ctTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggcggc                         <  1:1990584/100‑1 (MQ=255)
                                                                            ctTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATggcggc                         <  2:2825677/100‑1 (MQ=255)
                                                                               tAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCa                        <  2:356085/98‑1 (MQ=255)
                                                                               cttctgcgtcGCAGGCGCGCGGCCTGCGGCGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAgt                      <  1:3675497/91‑1 (MQ=37)
                                                                                aGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAgtc                     >  1:1524182/1‑100 (MQ=255)
                                                                                 gAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAgtcg                    >  1:109311/1‑100 (MQ=255)
                                                                                 gAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAgtcg                    >  2:2956276/1‑100 (MQ=255)
                                                                                 gAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAgtcg                    >  2:1187638/1‑100 (MQ=255)
                                                                                 gAAACACCGCAGGACGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAgtcg                    >  1:2655410/1‑100 (MQ=255)
                                                                                   aaCACCGAAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAgtcgtc                  >  1:2073440/1‑100 (MQ=255)
                                                                                    gcgtcGCAGGCGCGCGGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGtcgtcg                 >  1:3401840/5‑100 (MQ=255)
                                                                                    gcgtcGCAGGCGCGCGGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGtcgtcg                 >  2:2058735/5‑100 (MQ=255)
                                                                                    acacCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGtcgtcg                 >  1:1640053/1‑100 (MQ=255)
                                                                                      gtcGCAGGCGCGCGGCCTGCGGCGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGc               >  2:3832320/3‑100 (MQ=255)
                                                                                      gtcGCAGGCGCGCGGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGc               >  2:1982260/3‑100 (MQ=255)
                                                                                      gtcGCAGGCGCGCGGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGc               >  1:1908787/3‑100 (MQ=255)
                                                                                      gtcGCAGGCGCGCGGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGc               >  2:3643347/3‑100 (MQ=255)
                                                                                      gtcGCAGGCGCGCGGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGc               >  1:633268/3‑100 (MQ=255)
                                                                                      acCGCGGGCCGCGCGCCTGCGACGCAGACAACTGAGTCGTGAACTTCTTGAGCGCGATAAGACCACGTTAGCCATTTTGTTTATGGCGGCAGTAGTCGGc               <  2:2650394/100‑1 (MQ=255)
                                                                                      acCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGc               <  1:3616048/100‑1 (MQ=255)
                                                                                       ccGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGc               >  2:1326447/1‑99 (MQ=255)
                                                                                        cGCAGGCCGCGCGCCTGCGACGGAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCag             >  2:2295378/1‑99 (MQ=255)
                                                                                        cGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCAc             <  2:2752568/100‑1 (MQ=255)
                                                                                          cAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGc           >  1:707226/1‑100 (MQ=255)
                                                                                               cgcgcgCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCttgtt      >  1:2876626/1‑100 (MQ=255)
                                                                                                gcgcgcCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCttgttg     >  1:549588/1‑100 (MQ=255)
                                                                                                    |                                                                                                   
GGAACGTGCGAGTAAAATGCCGTCATCTTATTTGTATGACCAATAAGTGATCATTGGATGAAAACTGATACTCCCTCTTTAGAAACACCGCAGGCCGCGCGCCTGCGACGCAGACAACTGATTCGCCAACTTCTTGAGCGCGATAAAACCCCGTTAGCCATTTTGTTTATGGCGGCAGTCGTCGGCACGCTTGTTGGGC  >  NC_000913/175050‑175248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: