| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1041989 | NA (NA) | 10 (0.080) | 6/168 | NT | NA | noncoding (5/34 nt) | REP90 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP90 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1042017 | NA (NA) | noncoding (33/34 nt) | REP90 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP90 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
ACGCATACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGAccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1041891‑1041989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTTGTCATCAGCCTCAGAGCATTCAGGTAACTGAATGCTCTTTTTTATGCATT < NC_000913/1042017‑1041914 ACGCATACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGAC > 2:3360873/1‑100 CGCATACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACC < 1:1587319/100‑1 CGCATACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACC > 1:2267491/1‑100 CGCATACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACC > 2:2542886/1‑100 CGCATACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGAC > 2:1938380/1‑99 nATACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGG > 2:1730088/2‑100 CATACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGG < 2:3113137/100‑1 CATACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGG > 2:1233068/1‑100 CATACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGG > 1:1150062/1‑100 TACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGA > 2:1063319/1‑99 CATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGATGCGGCGTGATCGCCTTTTCCGG < 1:2592599/100‑1 CATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGATGCGGCGTGAACGCCTTTTCCGG < 1:3910556/100‑1 TAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGATGCGGCGTGAACGCCTTTTCCGGTC < 1:1400268/100‑1 TAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGATGCGGCGTGAACGCCTTTTCCGGTC < 1:2218069/100‑1 AAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGATGCGGCGTGAACGCCTTTTCCGGTCTAC < 1:628186/100‑1 AAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGATGCGGCGTGCACGCCTTTTCCGGTCTACGC < 1:3702228/100‑1 AAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGC < 1:379271/100‑1 AAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGC < 2:1273786/100‑1 CATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGACCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAG < 2:2837263/100‑1 ATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAAAGCGTAGACCGGATGCTGCGTGAACGCCTTTTCTGGTCTACGCATTAGACAGTTCTTCGTTTG < 1:1466604/100‑1 CCGGATGCGGCGTGAACTCCTTTTCCGCTCTACGCATTAGACAGTTCTTCGTTTGTCATCAGCCTCAGAGCATTCAGGTAACTGAATGCTCTTTTTTATG < 2:1836549/100‑1 CCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTTGTCATCAGCCTCAGAGCATTCAGGTAACTGAATGCTCTTTTTTATG < 1:407359/100‑1 CCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTTGTCATCAGCCTCAGAGCATTCAGGTAACTGAATGCTCTTTTTTATG < 2:1318922/100‑1 CCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTTGTCATCAGCCTCAGAGCATTCAGGTAACTGAATGCTCTTTTTTATG < 2:2126814/100‑1 CCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTTGTCATCAGCCTCAGAGCATTCAGGTAACTGAATGCTCTTTTTTATG < 1:2941427/100‑1 CCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTTGTCATCAGCCTCAGAGCATTCAGGTAACTGAATGCTCTTTTTTATG > 1:1259442/1‑100 GGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTTGTCATCAGCCTCAGAGCATTCAGGTAACTGAATGCTCTTTTTTATGCA > 2:1150053/1‑100 ATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTTGTCATCAGCCTCAGAGCATTCAGGTAACTGAATGCTCTTTTTTATGCATT < 1:3770245/100‑1 ATGCGGCGTGAACGCCTTTTCCGGTCTACGCAGTAGACAGGTCTTCGTTTGGCATCAGCTTCAGAGCATTCAGGTAACTGAATGCTCTTTTTTATGCATT < 2:1113150/100‑1 ACGCATACCGGCGTGCAGTTTGTAATGCATAAAAAAGAGCATTCAGTTACCTGAATGCTCTGAGGCTGATGACAAACGAAGAACTGTCTAATGCGTAGAccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1041891‑1041989‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGGATGCGGCGTGAACGCCTTTTCCGGTCTACGCATTAGACAGTTCTTCGTTTGTCATCAGCCTCAGAGCATTCAGGTAACTGAATGCTCTTTTTTATGCATT < NC_000913/1042017‑1041914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |