| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1062411 = | NA (NA) | 15 (0.110) | 9/166 | NT | NA | noncoding (5/134 nt) | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 1062444 = | NA (NA) | noncoding (38/134 nt) | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
CGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1062515‑1062411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAA > NC_000913/1062444‑1062542 CGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTT < 2:938077/100‑1CGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTT > 1:1842724/1‑100 GGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTC > 1:2490949/1‑100 GGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTC < 1:3499560/100‑1 GGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTC > 1:2482318/1‑100 GTCTACAACTCTTACAGTTCCTGTGGGCCGGATATGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGTTGCGACGCTAAACGCGGCTTTTC < 2:2328016/99‑1 GTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCA < 2:125669/100‑1 GTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCAGCCGGCAGCTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCA < 2:3599110/100‑1 TCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAG < 2:1042334/100‑1 TCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAG > 1:3055279/1‑100 CTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGG < 1:2074415/100‑1 CTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGG < 1:3931433/100‑1 TACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC > 2:920379/1‑100 TACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC > 1:2980388/1‑100 TACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC > 1:315483/1‑100 ACAAAGATTACAGTTCCTGTGGGCCGGATAAGTCGTTCGCGCCGCATCTGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGG < 2:3931370/98‑1 TGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTG > 1:3850845/1‑100 GCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGT > 1:675899/1‑100 GCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATCGCGCAGCTGCCGGATGTGGAGTGAACGTCTTATCCTGCCCACAGGGACTG > 2:538372/1‑97 CCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAAT > 1:2832189/1‑100 CCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAAT > 1:1030364/1‑100 CCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAAT > 1:493731/1‑100 CCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAAT > 1:2743276/1‑100 CCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAAT > 2:1204733/1‑100 CCATAATGCCTGATGCGACGCTAAACGCGTCTTTCCCGGCATTATGGCGCAGTTGCCGGATGCTGCGAGAACGTCTTATCCGGCCCACAGGAACTGT > 2:1773648/1‑97 CATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATC > 1:2686789/1‑100 CATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAAT > 1:1231270/1‑99 ATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCT > 1:1400622/1‑100 ATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTG > 1:1489609/1‑100 CCTGATGCGACGCTAAACGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAG > 2:3679522/1‑100 TGATGCGACGCTAAACGCGTCGCATCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGAC > 1:2789873/1‑100 gatctCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCC < 1:761208/95‑1 TCAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCC < 2:3684241/100‑1 CAGGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCG < 1:2583243/100‑1 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGC < 1:1414495/100‑1 GGCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGC > 2:874895/1‑100 GCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCA > 2:3076496/1‑100 GCATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCA > 1:3004685/1‑100 CATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCagatc > 2:761204/1‑95 CATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAA > 1:3077256/1‑100 CGGTCTACAAAGATTACAGTTCCTGTGGGCCGGATAAGACGTTCACGCCGCATCCGGCAACTGCGCCATAATGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1062515‑1062411‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcATTATGGCGCAGTTGCCGGATGCGGCGTGAACGTCTTATCCGGCCCACAGGAACTGTAATCTTTGTAGACCGGTTAAGATGCGTCATCGCATCCGGCAA > NC_000913/1062444‑1062542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |