| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1996046 = | 117 (0.830) | 21 (0.170) | 9/154 | NT | 17.6% | intergenic (+4/+64) | yecF/sdiA | DUF2594 family protein/quorum‑sensing transcriptional activator |
| ? | NC_000913 | 1996081 = | 95 (0.780) | intergenic (+39/+29) | yecF/sdiA | DUF2594 family protein/quorum‑sensing transcriptional activator | |||||
ATAAGACCCAGGTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCAGCCGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1996156‑1996046‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagccggttttTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTTTTTTCTG > NC_000913/1996081‑1996178 ATAAGACCCAGGTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTAT > 2:2091420/1‑100 TAAGACCCAGGTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATC < 1:1202600/100‑1 AAGACCCAGGTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCA < 1:602557/100‑1 AAGACCCAGGTTGCCTATTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCA < 1:3829960/100‑1 ggCCCAGGTTGCCTGTTACGCGGCCGCGACTGGCTTAGTTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCAG < 1:3817368/97‑1 GACCCAGGTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCAGC < 2:3876930/100‑1 GACCCAGGTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCAGC < 2:1021807/100‑1 ACCCAGGTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCAGCC > 2:2711114/1‑100 ACCCAGGTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCAGCC > 1:854423/1‑100 CCCAGGTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCAGCCG < 1:2209355/100‑1 CAGGTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCAGCCGGT < 2:3162615/100‑1 GTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCAGCCGGTTTT < 1:812203/100‑1 ATGCAAAAACCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAG > 1:1606789/1‑100 tccgatctCCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGG < 2:2207295/92‑1 GCAAAAACCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGC > 1:394132/1‑100 CAAAAACCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCA > 1:2381421/1‑100 CAAAAACCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCA > 1:3437389/1‑100 CAAAAACCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCA > 1:989647/1‑100 agAACCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATAAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAAC > 1:2678964/3‑100 AAAACCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAA > 2:3111622/1‑99 AACCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCT > 2:1374257/1‑100 aaCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCAAGAAGGACAGAAAAGAGATGAAATTAAGCGAGTAGCGGCCGCGTACCAGGCAACGTG > 1:799844/3‑100 ACCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTG > 1:891493/1‑100 ACCGGCTGAAAGGCACGCTAACAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTG > 2:2411706/1‑100 CCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGagatcgga > 1:2207307/1‑92 CCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGG > 1:1897379/1‑100 CCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGG > 2:2134745/1‑100 CCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGG > 2:2932981/1‑100 CCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGG > 1:2353063/1‑100 CCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGG > 1:2582943/1‑100 CCGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTG > 2:1845010/1‑99 CGGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGG > 1:1373629/1‑100 GGCTGAAAGGCACGCTATCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGT > 1:192734/1‑100 CAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAAT > 2:2026901/1‑100 CAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAAT > 2:218375/1‑100 AGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATT > 1:1618620/1‑100 GCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTT > 2:933765/1‑100 GCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTT > 2:2840474/1‑100 GCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTT > 1:1661592/1‑100 CCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAAACTGGGACTTATTTGGTGCATTAATTTT > 1:3240926/1‑100 GGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTTTTT > 1:1835170/1‑100 TTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTTTTTTC < 2:2735565/100‑1 TTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTTTTTTC < 1:1069897/100‑1 TTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTTTTTTC < 2:3719672/100‑1 TTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTTTTTTC < 1:2848697/100‑1 TTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTTTTTTCT < 2:1862096/100‑1 TTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTTTTTTCT < 1:3398706/100‑1 TTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTTTTTTCTG < 2:1557496/100‑1 ATAAGACCCAGGTTGCCTGTTACGCGGCCGCTACTGGCTTAATTTGATCTCTTTTCTGTCCTGCGTGCCAGATGCAAAAACCGGCTGAAAGGCACGCTATCAGCCGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1996156‑1996046‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcagccggttttTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAATTTTTTTCTG > NC_000913/1996081‑1996178 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |