| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2794135 | NA (NA) | 11 (0.080) | 10/168 | NT | NA | noncoding (108/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 2794163 | NA (NA) | noncoding (136/136 nt) | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2794037‑2794135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGTA < NC_000913/2794163‑2794060 GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGG < 1:1125781/100‑1GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGG > 1:1400830/1‑100GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGG < 2:1701722/100‑1GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGG < 1:3863194/100‑1 ACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGC > 1:1109771/1‑100 CGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCC > 1:2174691/1‑100 GCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCG < 2:3602968/100‑1 GCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCG < 1:258784/100‑1 GCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCG < 1:2952801/100‑1 GGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGC < 1:2211910/100‑1 GGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGCCAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGC < 2:101988/99‑1 TCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAAC < 2:551791/100‑1 CAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACAT < 1:461364/100‑1 CAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACAT > 2:3355268/1‑100 GGTCGGATAAGGCGTTTACGCCGCATCAGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAG < 1:3683718/100‑1 TCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGAT < 1:815824/100‑1 CGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATT < 1:371786/100‑1 AGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCC < 1:597005/100‑1 CCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTG < 1:3355291/100‑1 ACAATCTGTACGTGAACAGGAAGAAATCTATGTTGGCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCG < 1:871481/100‑1 GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCC > 2:358933/1‑100 GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCC > 2:802327/1‑100 CCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTAGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCC > 1:3129478/1‑100 CGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCG < 1:358933/100‑1 CGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCG < 2:1081697/100‑1 CGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCCGGATCCCCG > 2:3259590/1‑100 GGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGT > 2:2169987/1‑100 GGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGT > 1:2387070/1‑100 GGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGT > 1:155042/1‑100 GAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGTA > 2:877301/1‑100 GACGCTGCGCGTCTTGTCCGGCCTACGGGGATCCAGGTCGGATAAGGCGTTTACGCCGCATCCGACAATCTGTACGTGAACAGGAAGAAATCTATGTTGgccgg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/2794037‑2794135‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGAGAGCGGCTCCGCCTTACCCGGCCAACATAGATTTCTTCCTGTTCACGTACAGATTGTCGGATGCGGCGTAAACGCCTTATCCGACCTGGATCCCCGTA < NC_000913/2794163‑2794060 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |