| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3114511 | NA (NA) | 10 (0.080) | 6/164 | NT | NA | noncoding (134/168 nt) | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | = 3114541 | NA (NA) | noncoding (164/168 nt) | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
GGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3114413‑3114511‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCC < NC_000913/3114541‑3114439 GGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGTAAATGTGTTAACCCGGTGCGCCTTATTTCATG > 2:353919/1‑100 GGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGC > 2:1071785/1‑100 GGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGC > 2:2052576/1‑100 GGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGC < 1:3622383/100‑1 GGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATG > 2:46448/1‑99 GTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCC < 2:2709786/100‑1 GTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGG > 1:3236285/1‑100 GTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGG > 2:2694765/1‑100 TCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGA > 1:360065/1‑100 nTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGAT > 1:1096603/2‑100 GCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAA > 1:56098/1‑100 TTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCA < 1:1176808/100‑1 TTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCA < 2:1073235/100‑1 TTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCA < 1:1177429/100‑1 TCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCAT < 1:1806691/100‑1 TCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTGCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCAT < 2:2705515/100‑1 CCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCATG < 2:615609/100‑1 CCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCATG < 1:1596441/100‑1 CCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAA < 2:2705118/100‑1 gaCTGTGGGCCTGAGAAGCAGGTGCCTCGGGCAAATGTGTGAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAA < 2:2493152/97‑1 GTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATGCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGG < 1:519831/100‑1 cgatctGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGG < 1:588218/94‑1 CATGCCGGATGCGGCGCGAGCGCCTTATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGG > 1:1654106/1‑100 CCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAG > 1:2622300/1‑100 GGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAgatcg > 2:588215/1‑95 GGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCC > 2:2161914/1‑100 GGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCC < 1:1713413/100‑1 GGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCC < 1:1713389/100‑1 GGGTGTCTGCCAGCGCAAATAATCGCGGCTTTCCCCGTCTGTAGGCCCGATAAGCAGGCGCATCGGGCAAATGTGTTAACCCGGTGCGCCTTATTTCATgccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3114413‑3114511‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCATGAAATAAGGCGCACCGGGTTAACACATTTGCCCGATGCGCCTGCTTATCGGGCCTACAGACGGGGAAAGCC < NC_000913/3114541‑3114439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |