New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3898629 =	NA (NA)	17 (0.130)	10/162	NT	NA	intergenic (+20/+42)	cbrC/yieK	UPF0167 family protein/putative 6‑phosphogluconolactonase
	?	NC_000913	3898659 =	NA (NA)					intergenic (+50/+12)	cbrC/yieK	UPF0167 family protein/putative 6‑phosphogluconolactonase

AGCTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3898735‑3898629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcctTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACA  >  NC_000913/3898659‑3898755                                                                                                                                                                                                              AGCTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCT                                                                                                          >  1:1333409/1‑100  GCTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTC                                                                                                         >  1:532835/1‑100  GCTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTC                                                                                                         >  1:3273000/1‑100   CTGCATCCTTCGCTGATGGTAATCGCTGATAACGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCC                                                                                                        <  2:913780/100‑1   CTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCC                                                                                                        >  2:1910020/1‑100    TGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCG                                                                                                       >  2:2353343/1‑100     GCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGG                                                                                                      >  2:1191325/1‑100     GCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGG                                                                                                      >  2:358337/1‑100      CATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGC                                                                                                     >  1:1845384/1‑100      CATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGC                                                                                                     >  1:1844827/1‑100       ATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                                    <  2:3551070/100‑1       ATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                                    <  2:3313014/100‑1       ATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                                    <  2:3281096/100‑1       ATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                                    <  1:3187809/100‑1       ATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                                    >  1:3551096/1‑100       ATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCC                                                                                                    <  2:1616768/100‑1        TCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCT                                                                                                   >  2:701064/1‑100                                                                  GCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACC                                         >  1:1821629/1‑100                                                                   CTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCA                                        >  1:2155345/1‑100                                                                   CTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCCTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCA                                        >  1:350677/1‑100                                                                   CTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGATTAACCGAGGGCGAATTCTGCGGCATCGGCTTTATCAGCTATTACCA                                        >  2:2780017/1‑100                                                                       AGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAG                                    >  2:924155/1‑100                                                                        GAAATAACGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGC                                   >  1:2064831/1‑100                                                                          AATAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGA                                 >  1:329801/1‑100                                                                            TAAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAG                               >  1:2614445/1‑100                                                                             AAGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGG                              >  1:1884028/1‑100                                                                              AGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGA                             >  1:2477147/1‑100                                                                              AGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAA                                >  2:3663422/1‑97                                                                              AGGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACAGAGCGCTAATTCTGCGGCAGCGGCTTTATCAGCGCTTACCATCAGCGAAGG                              >  2:3816234/1‑99                                                                               GGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGCGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAT                            >  1:1387686/1‑100                                                                               GGCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGAT                            >  2:1820897/1‑100                                                                                GCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATG                           >  1:3927098/1‑100                                                                                GCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATG                           >  2:1176819/1‑100                                                                                GCCGGATGTGTGAATTACGCTCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATG                           >  2:3734396/1‑100                                                                                                    TCCGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTG       >  1:3219103/1‑100                                                                                                      CGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA     <  1:1121978/100‑1                                                                                                      CGGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGA     <  2:716251/100‑1                                                                                                       GGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA    <  2:3603716/100‑1                                                                                                       GGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA    >  1:2177365/1‑100                                                                                                       GGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA    >  2:3226229/1‑100                                                                                                       GGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA    <  1:1153703/100‑1                                                                                                       GGCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAA    <  2:2139530/100‑1                                                                                                        GCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTGCCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAAn   <  2:614797/100‑2                                                                                                        GCCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAAC   <  2:3441332/100‑1                                                                                                         CCTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACA  >  2:285922/1‑100                                                                                                          CTTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAACGATTACCATGAGCGAAGGGTGCAGCTGCAACACGGAAGCTGGAACA  >  2:2455285/1‑99                                                                                                                                                                                                              AGCTGCATCCTTCGCTGATGGTAATCGCTGATAAAGCCGCTGCCGCAGAATTAGCACTCGGTTAAGCTTAAGAAATAAGGCCGGATGTGTGAATTACGCTCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3898735‑3898629 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccggcctTATTTCTTAAGCTTAACCGAGTGCTAATTCTGCGGCAGCGGCTTTATCAGCGATTACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACA  >  NC_000913/3898659‑3898755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.