| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4306827 = | 146 (1.030) | 23 (0.190) | 13/156 | NT | 16.0% | intergenic (‑230/+43) | yjcS/alsK | metallo‑beta‑lactamase superfamily protein/D‑allose kinase |
| ? | NC_000913 | 4306864 = | 114 (0.920) | intergenic (‑267/+6) | yjcS/alsK | metallo‑beta‑lactamase superfamily protein/D‑allose kinase | |||||
CGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4306936‑4306827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgccaacgTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGC > NC_000913/4306864‑4306962 CGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGC > 1:3137297/1‑100CGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGC < 2:1985189/100‑1CGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGC < 2:54910/100‑1CGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGC < 2:2636431/100‑1CGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGC > 2:481375/1‑100CGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGC > 1:2496986/1‑100 CTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTG < 1:695131/100‑1 CTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTG < 1:2430380/100‑1 CTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTG > 1:2388700/1‑100 CTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCT > 1:2393835/1‑99 TCAGGGTGCAGCAATGTTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTG < 1:2401529/99‑1 TCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGT < 1:1379564/100‑1 CAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGag > 2:2401517/1‑98 AGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGC < 2:3283476/100‑1 AGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGC > 2:850767/1‑100 GGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCC > 1:197845/1‑100 GGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCC > 2:573882/1‑100 GGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCC > 1:3625265/1‑100 GGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCA > 2:3907158/1‑100 GGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCA < 2:197722/100‑1 TGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAAC < 2:1634757/100‑1 GCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACG < 1:2375172/100‑1 CCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTG > 1:152647/1‑100 GTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATAT > 1:2535452/1‑100 GTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATAT > 1:2541679/1‑100 AAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTG > 2:3634657/1‑100 AAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGACAATATTG > 2:3637365/1‑100 AACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCT > 1:3066305/1‑100 CGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGC > 2:3300182/1‑100 cTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGATTTCGCACAGAGCTGTGACAAAAAACGTTGATGCGCCAATATTGCTGCA > 2:1647048/2‑100 GTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGGACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCA > 2:2152439/1‑100 GTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCA > 1:3347098/1‑100 GTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCA > 1:346954/1‑100 GTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCA > 2:3860778/1‑100 TTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCAC > 2:1708270/1‑100 TGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACC > 1:9472/1‑100 TGGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTGACTCATGGGGCTTTAGCCCAGAACTGTGGCAAAAAAAGTTGATGCGCCAATAGTGCTGCACC > 2:1466214/1‑100 GGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCC > 1:1786773/1‑100 GGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCC < 2:346954/100‑1 GGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCC > 1:2088868/1‑100 GGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCC > 2:1253461/1‑100 GGCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCC > 1:1827408/1‑100 GCACAGTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCC > 2:1578046/1‑99 GTAGCGCAATGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCG > 2:1743530/1‑100 TGTCCCGCTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAG < 1:1743539/100‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAG < 1:562174/100‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAG < 2:3845916/100‑1 CTGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGAAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAG < 2:1122243/100‑1 CTGTGACAACGTTTTACTCATGGGGCTTTAGCACAGAACTATAAAAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAG < 2:3004271/100‑1 TGTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGA < 1:3027202/100‑1 GTGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGAT > 2:1266534/1‑100 TGCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATG < 2:3368115/100‑1 GCCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGA > 2:2477398/1‑100 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAG > 1:2084547/1‑100 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAG < 1:3542701/100‑1 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAG > 1:3070366/1‑100 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAG < 1:2022375/100‑1 CCAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAG > 1:849442/1‑100 CAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGG > 1:343554/1‑100 CAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGG > 2:3637202/1‑100 CAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGG < 2:1654317/100‑1 CAACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGG > 2:1553870/1‑100 atCGTTTTACTCATTGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGAAGCGGTAATATTGCTGCACCCTTAGCGCCATTAAAGTCAGAAGATGAGGC < 2:3761626/98‑1 AACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGC < 1:949901/100‑1 AACGTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGC > 1:3141879/1‑100 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGC < 2:2215565/100‑1 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGC < 1:3065808/100‑1 GTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGC < 2:1379555/100‑1 CGCTCAGGGTGCAGCAATATTGGCGCATCAACGTTTTTTGCCACAGTTCTGTGCTAAAGCCCCATGAGTAAAACGTTGGCACAGTAGCGCAATGTCCCGCTGTGCCAACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4306936‑4306827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgccaacgTTTTACTCATGGGGCTTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGC > NC_000913/4306864‑4306962 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |