| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4457195 | 145 (1.030) | 8 (0.060) | 8/164 | NT | 5.4% | noncoding (11/84 nt) | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4457211 | 145 (1.120) | noncoding (27/84 nt) | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP337 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4457090‑4457195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatGCGGCGTGAACGCCTTATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCA < NC_000913/4457211‑4457118 GGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGCAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGG < 2:2351336/100‑1GGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGGTATAGTATG‑‑CGT‑‑AGG > 1:3886080/1‑100GGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGG < 2:1348485/100‑1GGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGG < 1:515195/100‑1GGCGGATTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGG > 2:2219296/1‑100 CGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCC > 2:1455629/1‑100 CGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCC > 1:2103694/1‑100 CGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCC > 2:3640940/1‑100 CGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCC > 1:3230269/1‑100 CGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCC > 2:1026192/1‑100 GGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTTGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCG > 2:3377439/1‑100 GGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCG < 2:751615/100‑1 GGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCG > 1:3233339/1‑100 GTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGG > 1:3791875/1‑100 GTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGG < 2:1384955/100‑1 GTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGG < 2:2918855/100‑1 GTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGG > 1:2972849/1‑100 TTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGGA > 2:2832174/1‑100 TTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGGAT < 2:68486/100‑1 GGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCCTAGCCAGCTATAGTATG‑‑CGT‑‑GGGCCGGATaggg > 2:3907053/1‑93 TCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATCTAGTATG‑‑CGT‑‑AGGCCGGATGCGGCGTGAA > 1:1109701/1‑100 GCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGGATGCGGCGTGAACGCCTTATCCGGC < 1:1258893/100‑1 TGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGGATGCGGCGTGAACGCCTTATCCGGCCT < 1:867347/100‑1 GGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTA < 1:1513441/100‑1 ATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACG < 1:630726/100‑1 GCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CTCAAATGCCGGATGCTGCGTGAACGCCTTATCCGGCCTACGCATACT < 2:3055733/100‑1 AGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATGCTCAA‑‑ATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGCATACTATATCTG < 1:2071459/100‑1 TATG‑‑CGT‑‑ACGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGC > 1:3080880/1‑100 GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGC > 1:1787537/1‑100 CCGGATGCGGCGTGAACGCCTTATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCA > 1:2312797/1‑100 ATGCGGCGTGAACGCCTTATCCGGCCTACGCATACTATAGCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGGACATCCAG < 2:3425088/94‑1 GGCGGTTTTGGTGGGATCCATCAGAAACTGCTGGATGGGCTGGCGAAGAAGGCGGAAGCCGCGCAGTAATTCGGCCTTAGCCAGATATAGTATG‑‑CGT‑‑AGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4457090‑4457195‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggatGCGGCGTGAACGCCTTATCCGGCCTACGCATACTATATCTGGCTAAGGCCGAATTACTGCGCGGCTTCCGCCTTCTTCGCCAGCCCATCCAGCA < NC_000913/4457211‑4457118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |