New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3546221NA (NA)10 (0.080) 8/166 NT NA intergenic (+22/‑338) nfuA/gntT Fe/S biogenesis protein, putative scaffold/chaperone protein/gluconate transporter, high‑affinity GNT I system
?NC_000913 = 3546253 NA (NA)noncoding (32/36 nt) REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences REP253 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 167 total aligned reads displayed.

CTGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGC  >  NC_000913/3546122‑3546320
                                                                                                   |                                                                                                   
ctgctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGAtt                                                                                                     <  1:2053657/100‑1 (MQ=255)
  gctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgc                                                                                                   <  2:3184334‑M1/100‑3 (MQ=255)
  gctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgc                                                                                                   <  1:2800807‑M1/100‑3 (MQ=255)
  gctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgc                                                                                                   >  1:1301821‑M1/1‑98 (MQ=255)
  gctgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgc                                                                                                   >  2:1296103‑M1/1‑98 (MQ=255)
    tgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgccc                                                                                                 <  2:3503134‑M1/100‑5 (MQ=255)
    tgAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgccc                                                                                                 >  2:447625‑M1/1‑96 (MQ=255)
     gAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccg                                                                                                >  2:2807469‑M1/1‑95 (MQ=255)
     gAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccg                                                                                                >  2:1586253‑M1/1‑95 (MQ=255)
     gAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccg                                                                                                <  2:1408891‑M1/100‑6 (MQ=255)
      aaCGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccga                                                                                               >  1:375718‑M1/1‑94 (MQ=255)
      aaCGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccga                                                                                               >  2:1801686‑M1/1‑94 (MQ=255)
         gAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGc                                                                                            <  1:3643560/100‑1 (MQ=255)
         gAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGc                                                                                            <  1:2302790/100‑1 (MQ=255)
         gAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACGAAGTTATCCCCTCTTTTGTAGATTGCCCGATGc                                                                                            <  2:549814/100‑1 (MQ=255)
          aaTTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCg                                                                                           >  1:205199/1‑100 (MQ=255)
           aTTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGTACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGa                                                                                          >  2:1313538/1‑100 (MQ=255)
           aTTCCCGGAGCTGAAAGGTGTGCGCGAACTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGc                                                                                            <  2:3023881/98‑1 (MQ=255)
            ttCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGAc                                                                                         <  2:3520364/100‑1 (MQ=255)
             tCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACg                                                                                        <  1:3069336/100‑1 (MQ=255)
             tCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTACCCCCTCTTTTGTAGATTGCCCGATGCGACg                                                                                        <  2:2002486/100‑1 (MQ=255)
              cccGGAGCTGAAAGGTGTGCGCGATCTGACCGAACAGCAGCGCTGCGAACACTCCTTCTACTATGTTAGCTCCTCTTTTGTAGATTGCCCGATGc                                                                                            >  2:2351465/1‑95 (MQ=255)
              cccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGc                                                                                       >  1:2755567/1‑100 (MQ=255)
              cccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGc                                                                                       <  2:2166757/100‑1 (MQ=255)
               ccGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCt                                                                                      >  2:640795/1‑100 (MQ=255)
                  gAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTaaa                                                                                   <  1:2267609/100‑1 (MQ=255)
                     cTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCg                                                                                <  1:1586262/100‑1 (MQ=255)
                       gAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTCCTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTc                                                                              >  2:1320484/1‑100 (MQ=255)
                       gAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTc                                                                              >  1:1538319/1‑100 (MQ=255)
                       gAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTc                                                                              >  1:422666/1‑100 (MQ=255)
                        aaaGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCa                                                                             <  2:2702275/100‑1 (MQ=255)
                        aaaGGGGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCa                                                                             <  2:1107295/100‑1 (MQ=255)
                             tgtgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcg                                                                        <  1:2393167‑M1/100‑30 (MQ=255)
                              gtgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgg                                                                       <  2:627271‑M1/100‑31 (MQ=255)
                               tgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcggg                                                                      <  1:1844774‑M1/100‑32 (MQ=255)
                               tgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGG                                                                      <  1:1060504‑M2/100‑1 (MQ=255)
                               tgCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGG                                                                      >  2:2386797‑M2/1‑100 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggc                                                                     <  1:573676‑M1/100‑33 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGC                                                                     >  1:893559‑M2/1‑100 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGC                                                                     >  1:3793848‑M2/1‑100 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGC                                                                     >  1:2163711‑M2/1‑100 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGC                                                                     >  1:3722206‑M2/1‑100 (MQ=255)
                                gcgcGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAACTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggc                                                                     <  2:1869947‑M1/100‑33 (MQ=255)
                                 cgcgATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGcc                                                                    >  2:671358/1‑100 (MQ=255)
                                 cgcgATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGcc                                                                    >  1:895756/1‑100 (MQ=255)
                                    gATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggcaatc                                                                 <  1:76361‑M1/100‑37 (MQ=255)
                                       ctcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTgcccgaaatgacgctttagcgtcgcatcgggcaatctac                                                              <  1:2990892‑M1/100‑40 (MQ=255)
                                        tcACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTg                                                             <  1:1415019/100‑1 (MQ=255)
                                         cACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTg                                                             >  2:3072431/1‑99 (MQ=255)
                                         cACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGa                                                            <  2:205199/100‑1 (MQ=255)
                                           ccGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAAc                                                          >  1:1221137/1‑100 (MQ=255)
                                           ccGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAAc                                                          <  2:3420981/100‑1 (MQ=255)
                                                cacCAGCGCGGCGAACCCTCCTGCTACAAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCAAAAGCGTCATTTCGGGCCTACGTAGAAc                                                          <  2:579955/95‑1 (MQ=255)
                                                  ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                   <  2:1949693/100‑1 (MQ=255)
                                                  ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                   >  1:993562/1‑100 (MQ=255)
                                                  ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                   >  1:2514666/1‑100 (MQ=255)
                                                  ccAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGcc                                                   >  2:3659731/1‑100 (MQ=255)
                                                     gcgcGGCGAACACTCCTTCTCCTAAGTTATCCCCTTTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATCTGCCAg                                                 <  2:220286/99‑1 (MQ=255)
                                                      cgcgGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGAc                                               >  2:2774375/1‑100 (MQ=255)
                                                       gcggcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGTCCGATGCGCGGCTAAAGCGGCATTTCGGGCCTACGTTGAACATGTGCCAGAc                                               <  2:2318987/99‑1 (MQ=255)
                                                        cggcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGt                                             >  2:2453522/1‑100 (MQ=255)
                                                         ggcgAACACTCCTACTACTAAGTTAGCCGCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCGTACGTTGAACATGTGCCAGACGtt                                            <  2:1931721/100‑1 (MQ=255)
                                                          gcgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTg                                           >  1:1147430/1‑100 (MQ=255)
                                                           cgAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTgg                                          <  1:2634731/100‑1 (MQ=255)
                                                            gAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgc                                         >  2:981233/1‑100 (MQ=255)
                                                            gAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGgc                                         <  1:1088920/100‑1 (MQ=255)
                                                               cacTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgca                                      >  1:2458610/1‑100 (MQ=255)
                                                                 cTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCgcagc                                    >  1:3246224/1‑100 (MQ=255)
                                                                   ccTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCAt                                  >  1:19137/1‑100 (MQ=255)
                                                                   ccTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCAt                                  >  2:255271/1‑100 (MQ=255)
                                                                     tactactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTg                                <  2:1728576/100‑1 (MQ=255)
                                                                     tactactaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTg                                >  2:2267163/1‑100 (MQ=255)
                                                                         actaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCttt                            >  2:3416860/1‑100 (MQ=255)
                                                                         actaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCttt                            >  1:3347602/1‑100 (MQ=255)
                                                                          ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                           >  1:2235721/1‑100 (MQ=255)
                                                                          ctaAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTg                           >  1:235270/1‑100 (MQ=255)
                                                                           taAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGt                          <  1:1702380/100‑1 (MQ=255)
                                                                            aaGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTc                         >  1:1226586/1‑100 (MQ=255)
                                                                             aGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCa                        <  1:3625274/100‑1 (MQ=255)
                                                                              gTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCaa                       >  2:2048488/1‑100 (MQ=255)
                                                                                tATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAAt                     >  2:1806608/1‑100 (MQ=255)
                                                                                 aTCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATc                    <  2:1599793/100‑1 (MQ=255)
                                                                                  tCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATcc                   <  1:671362/100‑1 (MQ=255)
                                                                                   ccccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCt                  >  1:1385410/1‑100 (MQ=255)
                                                                                    cccTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTc                 <  1:3351935/100‑1 (MQ=255)
                                                                                       tctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGt              <  2:1061370/100‑1 (MQ=255)
                                                                                       tctTTTGTAGATTGCCCGATGCGACGCTAAAGCGGCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGt              <  1:1348877/100‑1 (MQ=255)
                                                                                        ctTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGtt             <  1:447627/100‑1 (MQ=255)
                                                                                           ttGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGt          <  1:3504741/100‑1 (MQ=255)
                                                                                            tGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGtt         <  2:281235/100‑1 (MQ=255)
                                                                                             gTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCaatctacaaaagaggggataacttagtagtaggagtgttcgccgcgctggtgttcggtgag        <  1:2990892‑M2/100‑62 (MQ=255)
                                                                                             gTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCaatctacaaaagaggggataacttagtagtaggagtgttcgccgcgctggtgttcggtgag        <  1:1915744‑M2/100‑62 (MQ=255)
                                                                                             gTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGttt        <  1:3822599/100‑1 (MQ=255)
                                                                                              tAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCaatctacaaaagaggggataacttagtagtaggagtgttcgccgcgctggtgttcggtgaga       <  2:2176925‑M2/100‑63 (MQ=255)
                                                                                              tAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTc       <  1:869372/100‑1 (MQ=255)
                                                                                                gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTccc     <  1:336490/100‑1 (MQ=255)
                                                                                                gATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTccc     <  1:255271/100‑1 (MQ=255)
                                                                                                  ttGCCCGATGCGACGCTAAAGCGTCATTTCGGGCaatctacaaaagaggggataacttagtagtaggagtgttcgccgcgctggtgttcggtgagatcgc   <  1:311769‑M2/100‑67 (MQ=255)
                                                                                                  ttGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCcg   >  2:847657/1‑100 (MQ=255)
                                                                                                   tGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCcgc  <  1:2810584/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CTGCTGAACGAATTCCCGGAGCTGAAAGGTGTGCGCGATCTCACCGAACACCAGCGCGGCGAACACTCCTACTACTAAGTTATCCCCTCTTTTGTAGATTGCCCGATGCGACGCTAAAGCGTCATTTCGGGCCTACGTTGAACATGTGCCAGACGTTGGCGCAGCATTGCTTTGTCAAATCCTCGGTTCGTTTCCCCGC  >  NC_000913/3546122‑3546320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.