New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3674441NA (NA)14 (0.110) 6/164 NT NA noncoding (61/93 nt) REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 = 3674473 NA (NA)noncoding (93/93 nt) REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences REP263 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 176 total aligned reads displayed.

CGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAA  >  NC_000913/3674342‑3674540
                                                                                                   |                                                                                                   
 gACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGg                                                                                                    >  1:822401‑M1/1‑99 (MQ=255)
  aCCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgc                                                                                                   >  2:738004‑M1/1‑98 (MQ=255)
    ccGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgccg                                                                                                 <  1:2530008‑M1/100‑5 (MQ=255)
     cgcgAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgccgg                                                                                                <  1:2160460‑M1/100‑6 (MQ=255)
     cgcgAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgccgg                                                                                                <  1:2386536‑M1/100‑6 (MQ=255)
       cgAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgccggat                                                                                              <  1:710432‑M1/100‑8 (MQ=255)
         aaTGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATaa                                                                                            <  2:3244465/100‑1 (MQ=255)
         aaTGCCGGGGAAAACGCAGCCGTTAAATAGGCCGGATGCGGCGTTAACGCCTTATCTGGCGTACAATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATa                                                                                             <  2:3028149/99‑1 (MQ=37)
          aTGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAg                                                                                           <  1:2786546/100‑1 (MQ=255)
             ccGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAACCGCCTTATCCGGCATACGATTTTATTCGGCCTGGCGCCCCGGAGGCCGGGTAAGATg                                                                                        >  1:47389/1‑100 (MQ=38)
              cGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATgc                                                                                       >  1:643893/1‑100 (MQ=255)
               ggggAAAACGCAGCCTTAAAATAGGCCGGCTGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATgcg                                                                                      <  1:781151/100‑1 (MQ=255)
               ggggAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATgcg                                                                                      <  1:2876991/100‑1 (MQ=255)
                   aaaaCGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCa                                                                                   >  1:7232/1‑99 (MQ=255)
                   aaaaCGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAg                                                                                  >  1:2502926/1‑100 (MQ=255)
                    aaaCGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgc                                                                                 <  1:1696007/100‑1 (MQ=255)
                        gCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAgcatcg                                                                             <  2:2152478/100‑1 (MQ=255)
                             cTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgccggatgcgatgctggcgcatcttatcc                                                                        <  1:1034276‑M1/100‑30 (MQ=255)
                             cTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgccggatgcgatgctggcgcatcttatcc                                                                        <  1:993474‑M1/100‑30 (MQ=255)
                             cTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgccggatgcgatgctggcgcatcttatcc                                                                        <  2:1585421‑M1/100‑30 (MQ=255)
                             cTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCC                                                                        >  2:3696240‑M2/1‑100 (MQ=255)
                              ttAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCG                                                                       <  2:3349597‑M2/100‑1 (MQ=255)
                              ttAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCG                                                                       <  1:1479763‑M2/100‑1 (MQ=255)
                               tAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGG                                                                      <  1:781008‑M2/100‑1 (MQ=255)
                                aaaaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgccggatgcgatgctggcgcatcttatccggc                                                                     <  1:2790306‑M1/100‑33 (MQ=255)
                                aaaaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGC                                                                     <  2:3864959‑M2/100‑1 (MQ=255)
                                aaaaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGC                                                                     >  2:238761‑M2/1‑100 (MQ=255)
                                 aaaTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGC                                                                     <  2:532324‑M2/99‑1 (MQ=255)
                                 aaaTAGGCCGGATGCAGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCt                                                                    <  1:3893826/100‑1 (MQ=255)
                                  aaTAGGCCGGATGCGGCGTAAGCGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGgccggatgcgatgctggcgcatcttatccggcc                                                                    <  1:1060975‑M1/99‑34 (MQ=255)
                                   aTAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCtat                                                                  >  1:2981500/1‑100 (MQ=255)
                                    tAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCtata                                                                 <  1:2915896/100‑1 (MQ=255)
                                      ggCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAAt                                                               <  2:311865/100‑1 (MQ=255)
                                       gCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAAGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATg                                                              >  2:3640299/1‑100 (MQ=255)
                                        ccGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATgc                                                             <  1:513269/100‑1 (MQ=255)
                                        ccGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATgc                                                             >  1:1403632/1‑100 (MQ=255)
                                           gATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGca                                                          <  2:2787552/100‑1 (MQ=255)
                                           gATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGca                                                          <  1:346562/100‑1 (MQ=255)
                                            aTGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGcac                                                         >  1:3196219/1‑100 (MQ=255)
                                              gcggcgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACAt                                                       >  1:3733820/1‑100 (MQ=255)
                                               cggcgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACAt                                                       >  2:359685/1‑99 (MQ=255)
                                               cggcgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATa                                                      >  2:3256157/1‑100 (MQ=255)
                                               cggcgTAAACGCCTTATCCGGCATACGATTGTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATa                                                      >  1:1189899/1‑100 (MQ=255)
                                                  ngTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAAcc                                                   >  2:1276157/2‑100 (MQ=255)
                                                  cgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAAcc                                                   >  2:3076783/1‑100 (MQ=255)
                                                  cgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAAcc                                                   <  1:2103312/100‑1 (MQ=255)
                                                  cgTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAAcc                                                   <  1:2113480/100‑1 (MQ=255)
                                                   gTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACct                                                  <  1:1359949/100‑1 (MQ=255)
                                                      aaCGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCtt                                               <  2:2225108/100‑1 (MQ=255)
                                                       aCGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTg                                              <  1:3719625/100‑1 (MQ=255)
                                                       aCGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTg                                              <  1:425639/100‑1 (MQ=255)
                                                        cGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGa                                             <  1:1997645/100‑1 (MQ=255)
                                                        cGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGa                                             >  1:1817065/1‑100 (MQ=255)
                                                        cGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGa                                             <  1:3706684/100‑1 (MQ=255)
                                                         gCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGaa                                            <  1:2903203/100‑1 (MQ=255)
                                                         gCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGa                                             <  2:2450143/99‑1 (MQ=255)
                                                          ccTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGaaa                                           <  1:2840882/100‑1 (MQ=255)
                                                             tATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTc                                        <  2:1217077/100‑1 (MQ=255)
                                                              aTCCGGCATACGTTTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCg                                       <  2:356283/100‑1 (MQ=255)
                                                              aTCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCg                                       <  1:2210862/100‑1 (MQ=255)
                                                                ccGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTc                                     <  2:2092394/100‑1 (MQ=255)
                                                                ccGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTc                                     <  1:3091232/100‑1 (MQ=255)
                                                                 cGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTcc                                    <  1:1774359/100‑1 (MQ=255)
                                                                 cGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATACGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTc                                     >  2:677316/1‑99 (MQ=255)
                                                                 cGGCATACGATGTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCTGGCTATAATGCGCACATAACCTCTTGAATCTCGTcc                                    <  2:449881/100‑1 (MQ=255)
                                                                   gCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTcccc                                  <  1:2361248/100‑1 (MQ=255)
                                                                   gCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTcccc                                  >  2:2879336/1‑100 (MQ=255)
                                                                   gCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTcccc                                  <  2:373869/100‑1 (MQ=255)
                                                                   gCATACGATTTTAGTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTc                                     <  2:3188690/97‑1 (MQ=255)
                                                                    cATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCa                                 >  2:1834004/1‑100 (MQ=255)
                                                                      tACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCaga                               >  1:593341/1‑100 (MQ=255)
                                                                      tACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCaga                               >  2:306554/1‑100 (MQ=255)
                                                                       aCGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCagag                              >  1:699286/1‑100 (MQ=255)
                                                                        cGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCGCATAACCTCTTGAAACTGGTCCCCAGAGc                             >  1:1714538/1‑100 (MQ=255)
                                                                        cGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGc                             >  1:1069147/1‑100 (MQ=255)
                                                                        cGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGc                             >  1:1796465/1‑100 (MQ=255)
                                                                         gATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCCGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGGAACTCGTCACCAAAGc                             >  2:2505688/1‑99 (MQ=37)
                                                                         gATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGcc                            <  1:3349619/100‑1 (MQ=255)
                                                                         gATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGcc                            <  2:3530396/100‑1 (MQ=255)
                                                                              tATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTc                       <  2:2480850/100‑1 (MQ=255)
                                                                                ttCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAg                     <  2:2244325/100‑1 (MQ=255)
                                                                                 tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCTTCTATATTGCTCACACGACGACCACAGACTCGTACCCAGAGCCTCTTCAGc                    <  2:2893160/100‑1 (MQ=16)
                                                                                 tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGc                    <  2:781109/100‑1 (MQ=255)
                                                                                 tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGc                    <  1:1132146/100‑1 (MQ=255)
                                                                                 tCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGc                    <  1:3193046/100‑1 (MQ=255)
                                                                                   ggCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTTAAACTCGTCCCCAGAGCCTCTTCAGCCa                  >  2:541904/1‑100 (MQ=255)
                                                                                     ccTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATc                <  1:1276166/100‑1 (MQ=255)
                                                                                       tGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTa              <  2:280058/100‑1 (MQ=255)
                                                                                         gCTCGCCGTAGGCGGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCTCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATc                <  2:3395273/96‑1 (MQ=255)
                                                                                         gCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTAtt            <  2:2915646/100‑1 (MQ=255)
                                                                                           tCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTg          <  1:3391924/100‑1 (MQ=255)
                                                                                            ccccGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTgg         >  2:1867290/1‑100 (MQ=255)
                                                                                             cccGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTggg        >  1:2755318/1‑100 (MQ=255)
                                                                                             cccGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTggg        <  1:1021153/100‑1 (MQ=255)
                                                                                             cccGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTggg        <  2:1753137/100‑1 (MQ=255)
                                                                                             cccGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTggg        >  2:2286650/1‑100 (MQ=255)
                                                                                               cGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAg      <  1:938010/100‑1 (MQ=255)
                                                                                                gTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGc     <  1:3621967/100‑1 (MQ=255)
                                                                                                  aGGCCGGATAAGATGCGCCAGCATCGCATCCGGCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctatt   <  1:342585‑M2/100‑67 (MQ=255)
                                                                                                  aGGCCGGATAAGATGCGCCAGCATCGCATCCGGCctacggggagccaggccgaataaaatcgtatgccggataaggcgtttacgccgcatccggcctatt   <  1:3737411‑M2/100‑67 (MQ=255)
                                                                                                   |                                                                                                   
CGACCCGCGAATGCCGGGGAAAACGCAGCCTTAAAATAGGCCGGATGCGGCGTAAACGCCTTATCCGGCATACGATTTTATTCGGCCTGGCTCCCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCTATAATGCGCACATAACCTCTTGAAACTCGTCCCCAGAGCCTCTTCAGCCATCTATTTGGGAGCAAA  >  NC_000913/3674342‑3674540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.