New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4266888 =NA (NA)14 (0.110) 7/164 NT NA noncoding (1/97 nt) RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 4266918 = NA (NA)noncoding (31/97 nt) RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP318 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 202 total aligned reads displayed.

AATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGA  >  NC_000913/4266789‑4266987
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aaTGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGGCTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCtgtg                                                                                                     <  1:667234/100‑1 (MQ=255)
   gACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCg                                                                                                  >  1:2309592/1‑100 (MQ=255)
   agagtgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCg                                                                                                  >  1:3723301‑M1/97‑100 (MQ=255)
    gagtgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCgg                                                                                                 <  2:137819‑M1/5‑1 (MQ=255)
    gagtgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCgg                                                                                                 >  1:1921546‑M1/96‑100 (MQ=255)
     cGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGa                                                                                                >  2:456052/1‑100 (MQ=255)
     cGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGa                                                                                                >  1:924634/1‑100 (MQ=255)
     cGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGa                                                                                                <  1:1907120/100‑1 (MQ=255)
      gtgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCGGAt                                                                                               >  1:2805784‑M1/94‑100 (MQ=255)
      gtgagactcatgacaaacgtacatccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCGGAt                                                                                               >  2:312046‑M1/94‑100 (MQ=255)
       aaaGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATg                                                                                              <  1:1229599/100‑1 (MQ=255)
        aaGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATgc                                                                                             >  1:1841329/1‑100 (MQ=255)
         aGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATgcg                                                                                            >  1:3106802/1‑100 (MQ=255)
         aGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCATTCTGTAACATTTGATTGTCTGTGCCGGATgcg                                                                                            >  1:1445852/1‑100 (MQ=255)
          gTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATgcgg                                                                                           <  1:3918120/100‑1 (MQ=255)
           tAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATgcggc                                                                                          <  2:1661255/100‑1 (MQ=255)
              gcgcTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGAATGCGGCGTg                                                                                       >  2:2582965/1‑100 (MQ=255)
                gcTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGaa                                                                                     >  1:974878/1‑100 (MQ=255)
                 cTTACGATCTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAAt                                                                                    >  2:2071604/1‑100 (MQ=255)
                 cTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAAt                                                                                    >  1:806093/1‑100 (MQ=255)
                  ttACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATg                                                                                   >  1:707687/1‑100 (MQ=255)
                  ttACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATg                                                                                   <  1:3221258/100‑1 (MQ=255)
                  ttACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATg                                                                                   <  1:1802822/100‑1 (MQ=255)
                   tACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGc                                                                                  >  2:2632869/1‑100 (MQ=255)
                    aCGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTCATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGcc                                                                                 >  2:1722764/1‑100 (MQ=255)
                    aCGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGcc                                                                                 >  1:2460256/1‑100 (MQ=255)
                    aCGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGcc                                                                                 <  2:345625/100‑1 (MQ=255)
                    aCGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGcc                                                                                 <  1:3331317/100‑1 (MQ=255)
                    aCGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGcc                                                                                 <  2:3013427/100‑1 (MQ=255)
                     cGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCt                                                                                <  1:1475477/100‑1 (MQ=255)
                       aaCTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTa                                                                              <  1:3588225/100‑1 (MQ=255)
                         cTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATc                                                                            >  2:1156026/1‑100 (MQ=255)
                         cTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATc                                                                            <  1:1176534/100‑1 (MQ=255)
                          ttattaCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATcc                                                                           >  2:470778/1‑100 (MQ=255)
                            attaCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCgg                                                                         >  2:2889589/1‑100 (MQ=255)
                             tccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCGGATGCGGCGTGAATGCCTTATCCGGc                                                                        >  1:1639978‑M1/71‑100 (MQ=255)
                             tccgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCGGATGCGGCGTGAATGCCTTATCCGGc                                                                        >  1:2370615‑M1/71‑100 (MQ=255)
                              taCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGcc                                                                       <  1:2607342/100‑1 (MQ=255)
                              taCGCGCCTGACTTCAAGGGTCGCGATGAAATAAGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGACGGATGCGGCGTGAATGCCTTATCCGGcc                                                                       >  2:2370014/1‑100 (MQ=255)
                              ccgccagaggcacgacctttataagagcatgaaagaacatcaacttgttgaatttttaggattttattgGCCGGATGCGGCGTGAATGCCTTATCCGGcc                                                                       >  2:3135856‑M1/70‑100 (MQ=255)
                               cgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCGGATGCGGCGTGAATGCCTTATCCGGCCa                                                                      >  1:3478393‑M1/69‑100 (MQ=255)
                               cgccagaggcacgacctttataagagcatgaaagaacatcaacttattgaatttttaggattttattgGCCGGATGCGGCGTGAATGCCTTATCCGGCCa                                                                      >  2:2132363‑M1/69‑100 (MQ=255)
                               aCGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCa                                                                      <  2:1884268/100‑1 (MQ=255)
                                cgcgCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCaa                                                                     >  1:1572362/1‑100 (MQ=255)
                                  cgcCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATa                                                                   <  2:398950/100‑1 (MQ=255)
                                   gcCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATaa                                                                  >  2:1632895/1‑100 (MQ=255)
                                    ccTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATaaa                                                                 >  2:3839207/1‑100 (MQ=255)
                                     cTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATaaaa                                                                <  1:365533/100‑1 (MQ=255)
                                      tGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAAt                                                               <  2:1584147/100‑1 (MQ=255)
                                      tGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAAt                                                               >  2:602295/1‑100 (MQ=255)
                                      tGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAAt                                                               <  1:3814787/100‑1 (MQ=255)
                                      tGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAAt                                                               <  2:3553075/100‑1 (MQ=255)
                                       gACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATc                                                              >  1:1665329/1‑100 (MQ=255)
                                        aCTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATcc                                                             <  2:1997151/100‑1 (MQ=255)
                                            cAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTaaa                                                         >  1:1982221/1‑100 (MQ=255)
                                            cAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTaaa                                                         >  2:2725063/1‑100 (MQ=255)
                                             aaGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTaaaa                                                        <  2:3229946/100‑1 (MQ=255)
                                              aGGGTCGCGATGAAATACGTGGATTAAGCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTaaaaa                                                       <  2:3652794/100‑1 (MQ=255)
                                                 gTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTc                                                    <  2:1406391/100‑1 (MQ=255)
                                                    gcgATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAAt                                                 <  1:1466660/100‑1 (MQ=255)
                                                    gcgATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAAt                                                 >  2:83784/1‑100 (MQ=255)
                                                     cgATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAAt                                                 >  2:2792914/1‑99 (MQ=255)
                                                      gATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATaa                                               >  1:3615889/1‑100 (MQ=255)
                                                         gAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGtt                                            <  2:360635/100‑1 (MQ=255)
                                                           aaTACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGa                                          <  1:2536464/100‑1 (MQ=255)
                                                           aaTACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGa                                          >  1:2724462/1‑100 (MQ=255)
                                                             tACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATg                                        >  1:574827/1‑100 (MQ=255)
                                                              aCGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGt                                       <  2:3916992/100‑1 (MQ=255)
                                                                gTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTc                                     >  2:3584133/1‑100 (MQ=255)
                                                                atctaTTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTc                                     <  1:3682078/96‑1 (MQ=255)
                                                                 tGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCt                                    >  1:1086556/1‑100 (MQ=255)
                                                                  ggATTAATCGTTCTGTCATATTTGATTGTCTGTGCCGGAAGCGGCGTGAATGCCTTATCCGGCCAATACAATACTACAAATTCACTCAGTTGATGTTc                                     >  1:893843/1‑98 (MQ=37)
                                                                    aTTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTcagat                                 >  2:3682050/1‑96 (MQ=255)
                                                                     ttAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCa                                <  2:3749499/100‑1 (MQ=255)
                                                                       aaTCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                              <  2:2090110/100‑1 (MQ=255)
                                                                       aaTCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                              >  1:541357/1‑100 (MQ=255)
                                                                       aaTCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATg                              >  2:3074614/1‑100 (MQ=255)
                                                                        aTCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGc                             >  1:1585444/1‑100 (MQ=255)
                                                                        aTCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGc                             >  1:2119313/1‑100 (MQ=255)
                                                                           gTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGctct                          <  1:103982/100‑1 (MQ=255)
                                                                           gTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGctct                          >  2:1203243/1‑100 (MQ=255)
                                                                             tCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTta                        <  1:2717592/100‑1 (MQ=255)
                                                                               tGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTtata                      >  2:774872/1‑100 (MQ=255)
                                                                                gTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATaa                     >  1:3176528/1‑100 (MQ=255)
                                                                                gTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATaa                     <  2:1570956/100‑1 (MQ=255)
                                                                                  aaTATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAg                   <  1:3701727/100‑1 (MQ=255)
                                                                                     ttaggattttattgGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTc                >  1:2981321‑M1/15‑100 (MQ=255)
                                                                                      tttGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCg               <  1:615113/100‑1 (MQ=255)
                                                                                       ttGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGt              <  2:1767665/100‑1 (MQ=255)
                                                                                         gATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGc            <  1:2081934/100‑1 (MQ=255)
                                                                                          aTTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTCAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGcc           >  2:1492195/1‑100 (MQ=255)
                                                                                            tGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCctc         >  1:1453647/1‑100 (MQ=255)
                                                                                               cTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTgg      <  1:3049353/100‑1 (MQ=255)
                                                                                               cTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTgg      >  2:1025031/1‑100 (MQ=255)
                                                                                                tgtgCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGc     >  2:1466731/1‑100 (MQ=255)
                                                                                                 gtgCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCATTAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCg    <  2:2184544/100‑1 (MQ=255)
                                                                                                 gtgCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCg    <  1:761072/100‑1 (MQ=255)
                                                                                                 gtgCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCg    >  2:1097799/1‑100 (MQ=255)
                                                                                                   GCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGa  <  1:2872799‑M1/100‑1 (MQ=255)
                                                                                                   GCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGa  >  2:1447469‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
AATGACGAAAGTAAGCGCTTACGAACTTATTACGCGCCTGACTTCAAGGGTCGCGATGAAATACGTGGATTAATCGTTCTGTAATATTTGATTGTCTGTGCCGGATGCGGCGTGAATGCCTTATCCGGCCAATAAAATCCTAAAAATTCAATAAGTTGATGTTCTTTCATGCTCTTATAAAGGTCGTGCCTCTGGCGGA  >  NC_000913/4266789‑4266987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.