New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1432763 =	NA (NA)	12 (0.090)	6/168	NT	NA	coding (353/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein
	?	NC_000913	1432785 =	NA (NA)					coding (375/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein

GTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGA  >  NC_000913/1432699‑1432835                                                                                       |                                                   gTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGCCTCCCGGatccgg                                       >  2:1667362/1‑95 (MQ=1)           tATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGCCTCCCGGATCCGgaacagttttt                             <  2:2721787/100‑9 (MQ=1)            atagCCGGAAGGAGAGTTTAAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACaaaa                            <  2:2999727/97‑1 (MQ=0)                    aaggcaaGTCTCATAAGTGGAACGGCACAGCCTTGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGTATCCGGGAGGCGGAAGAAACAAAAAACAACCt                    <  2:2057277/94‑1 (MQ=1)                                      gggaCGGCAAAGGGTGGGTGAAGGGTACGGAAGGAGAAAATCTGTTCCTGATCCGGGAGGCGGAAGAAACAAAAAACATCTTGATGCAGGTAGCCAGTGa  <  2:2615021/97‑1 (MQ=1)                                                                                       |                                                   GTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATACGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAAAAACAACCTGATGCAGGTAGCCAGTGA  >  NC_000913/1432699‑1432835

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.