| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4209894 = | NA (NA) | 9 (0.070) | 5/156 | NT | 100% | intergenic (+45/‑149) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon |
| ? | NC_000913 | 4209912 = | 0 (0.000) | intergenic (+63/‑131) | gltV/rrlE | tRNA‑Glu/23S ribosomal RNA of rrnE operon | |||||
GGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATG > NC_000913/4209813‑4210011 | gagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtt > 1:939653‑M2/100‑100 (MQ=255)gagagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtt < 1:3725255‑M2/1‑1 (MQ=255) ttgaaacaccgaacaactttcgttgtacagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttt > 2:47218‑M2/99‑100 (MQ=255) agagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttt < 1:625851‑M2/2‑1 (MQ=255) agagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttt < 1:844417‑M2/2‑1 (MQ=255) agagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagttt < 1:1974465‑M2/2‑1 (MQ=255) gagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtttt > 1:3336693‑M2/98‑100 (MQ=255) gagactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtttt > 1:3069795‑M2/98‑100 (MQ=255) agactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTg < 1:3372836‑M2/4‑1 (MQ=255) agactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTg < 2:3478386‑M2/4‑1 (MQ=255) gactcacgaacaactttcgttgttcagtgtttcacttttcagcttgatccagatttttaaagatcaaatatctcaaacatcacccgaagatgagtTTTga > 2:1704733‑M2/96‑100 (MQ=255) gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga < 1:908721‑M2/5‑1 (MQ=255) gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga > 1:2347141‑M2/96‑100 (MQ=255) gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga < 2:3377572‑M2/5‑1 (MQ=255) gactcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga < 1:2906487‑M2/5‑1 (MQ=255) gactcacgaacaactatcgttgttcagtgtttcaattttcagcatgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTga < 2:1371796‑M2/5‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 1:2128394‑M2/6‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 1:2214460‑M2/6‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 1:1593502‑M2/6‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 1:470003‑M2/6‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 1:469949‑M2/6‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 2:451474‑M2/6‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 1:3600583‑M2/6‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 2:2907251‑M2/6‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 1:1269531‑M2/6‑1 (MQ=255) actcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 1:3102761‑M2/6‑1 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccatatttttaaagagcaaatatctcaaacatcacccgaagataagtTTTgaga > 2:2036329‑M2/94‑100 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga < 1:3337371‑M2/7‑1 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga < 2:1554187‑M2/7‑1 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga < 1:1957952‑M2/7‑1 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga > 1:903286‑M2/94‑100 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga > 1:879786‑M2/94‑100 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga > 1:2049158‑M2/94‑100 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga > 1:3770315‑M2/94‑100 (MQ=255) ctcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgaga < 1:2710367‑M2/7‑1 (MQ=255) tcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTgag < 2:3239390‑M2/6‑1 (MQ=255) tcacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGat > 2:550924‑M2/93‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 1:624814‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 2:3438864‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 1:2445004‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 1:1387376‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGata > 1:1189106‑M2/92‑100 (MQ=255) cacgaacaactttcgttgttcagtgtttcaattgtcagcttgatccagatttttgaagagcaaatatctcatacatcacccgaagatgagtTTTGAGat > 2:1163141‑M2/92‑99 (MQ=255) cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt < 2:84203‑M2/11‑1 (MQ=255) cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt > 2:2330824‑M2/90‑100 (MQ=255) cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt > 2:3197322‑M2/90‑100 (MQ=255) cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt > 1:2820781‑M2/90‑100 (MQ=255) cgaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt > 1:1668435‑M2/90‑100 (MQ=255) gaacaactttcgttgttcagtgtttcaattttcagcttgatccagatttttaaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATAtt < 2:275222‑M2/11‑1 (MQ=255) aaagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGaaa > 2:3742052‑M2/38‑100 (MQ=255) aagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAacgagag > 1:2315738‑M2/37‑97 (MQ=255) aagagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAg > 1:684159‑M2/37‑100 (MQ=255) gagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgtt > 1:1016165‑M2/35‑100 (MQ=255) gagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgtt > 1:2726722‑M2/35‑100 (MQ=255) gagcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgt > 1:2384105‑M2/35‑99 (MQ=255) agcaaatatctcaaacatcacccgaagatgagaTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgttg > 1:1496130‑M2/34‑100 (MQ=255) gcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAGAgttgt > 1:2377545‑M2/33‑100 (MQ=255) gcaaatatctcaaacatcacccgaagatgagtTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAgttgt > 1:1056564‑M2/33‑100 (MQ=255) TTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGc < 2:2681506‑M2/91‑1 (MQ=255) TTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg > 2:3943799‑M2/1‑100 (MQ=255) TTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg > 1:120209‑M2/1‑100 (MQ=255) TTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgatg > 2:619077‑M2/1‑100 (MQ=255) TTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACgat > 2:40276‑M2/1‑99 (MQ=255) | GGCGGTAACAGGGGTTCGAATCCCCTAGGGGACGCCACTTGCTGGTTTGTGAGTGAAAGTCACCTGCCTTAATATCTCAAAACTCATCTTCGGGTGATGTTTGAGATATTTGCTCTTTAAAAATCTGGATCAAGCTGAAAATTGAAACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACACGATG > NC_000913/4209813‑4210011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |