| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,705,978 | A→C | 26.8% | intergenic (‑188/+120) | dppB ← / ← dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,705,978 | 0 | A | C | 26.8% | 558.2 / 212.9 | 285 | intergenic (‑188/+120) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base A (81/112); new base C (62/2); total (171/114) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.83e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.38e-03 | |||||||||||
Only 100 of 289 total aligned reads displayed.
GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705879‑3706077 | gTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACGAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg < 1:2789006/100‑1 (MQ=255) gTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACg < 1:1300910/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 2:3754103/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:532975/100‑1 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:3018742/1‑100 (MQ=255) gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa < 1:1774437/100‑1 (MQ=255) ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt < 2:1280650/100‑1 (MQ=255) tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 1:150553/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:830343/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 2:1896680/1‑100 (MQ=255) gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTGAACGCCTTATcc < 1:2589120/100‑1 (MQ=255) cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 2:3629323/1‑100 (MQ=255) ggATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGc < 1:1981352/100‑1 (MQ=37) ggATGGCGCTGCACGCAGACGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTGGTTTATGCCGTTTGCGGCTTTAACGCCtttttcg > 2:1585974/1‑93 (MQ=25) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:3391859/99‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:1868115/100‑1 (MQ=255) aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:2541420/100‑1 (MQ=255) tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑a < 1:697369/100‑1 (MQ=255) tcgcTGCACGCAGAGGCACAGCGCCACCGGGGATACAGATGGTTGACAAAGTGCGCGTTGGGTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑a > 1:3145757/2‑100 (MQ=21) gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaa > 1:1588550/1‑100 (MQ=255) cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaaa > 2:2187834/1‑100 (MQ=255) cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATACCGGATCCGGCGTTAACGCCTTATCCGCCCT‑‑AC‑aaa > 2:2724628/1‑99 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAt < 1:3629351/100‑1 (MQ=255) tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAt > 1:3256633/1‑100 (MQ=255) gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATc > 1:1916829/1‑100 (MQ=255) gaCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACACAGTACGCTATGTTTATGCCGAATGCGTCTTTAACGCCTTATCCGTCCT‑‑Acgca > 2:1485222/2‑93 (MQ=25) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCg < 2:2286037/100‑1 (MQ=255) cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCg < 1:2869382/100‑1 (MQ=255) aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt < 2:834424/100‑1 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt > 2:1686935/1‑99 (MQ=255) cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 1:3787153/100‑1 (MQ=255) gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc > 1:3551049/1‑100 (MQ=255) gCACAGCGCTACCGGGTATTCAGATGGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 2:1924443/100‑1 (MQ=255) gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTc < 1:1653585/100‑1 (MQ=255) cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCa > 1:2314827/1‑100 (MQ=255) acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCaa < 1:1145316/100‑1 (MQ=255) cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTg < 2:1773465/100‑1 (MQ=255) cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAg < 2:1039507/100‑1 (MQ=255) gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGa > 1:727708/1‑100 (MQ=255) gTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑‑AAATCGTGCAAATTCAATACATTGCAGAAt‑t > 1:1377222/1‑100 (MQ=255) ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAACTTCAATACATTGCAGAAt‑t‑‑‑t < 2:2411721/100‑1 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAt‑t‑‑‑tt > 1:929310/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAt‑t‑‑‑tt > 2:1259000/1‑100 (MQ=255) taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAt‑t‑‑‑tt > 1:1104764/1‑100 (MQ=255) aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTc < 2:296087/100‑1 (MQ=255) cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑g < 2:1370813/100‑1 (MQ=255) cataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGc > 2:3227649/6‑100 (MQ=18) tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTg > 1:2901318/1‑100 (MQ=255) aaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAg < 1:1216033/100‑1 (MQ=255) tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCgg < 2:1329633/100‑1 (MQ=255) gcgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGa < 1:3423430/100‑1 (MQ=255) gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgc < 1:2997335/100‑1 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg > 2:2019414/1‑100 (MQ=255) cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAgcg > 2:1503135/1‑100 (MQ=255) ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:1123426/100‑1 (MQ=255) ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCACCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATc > 1:3864568/7‑100 (MQ=21) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc > 1:875368/1‑100 (MQ=255) gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 2:3528445/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 1:3694331/100‑1 (MQ=255) tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCa > 1:307054/1‑100 (MQ=255) gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAACATATTGCAATTC‑T‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 1:2104335/5‑100 (MQ=18) gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCAGGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2324274/5‑100 (MQ=18) taggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑GAATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:1637322/4‑100 (MQ=18) taggCCGGATAAGGCGTTCACTCCGCATCCGGCCT‑‑AC‑AAAAGCACGCAAATTCAATATATTGCAGAGA‑T‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:813508/4‑100 (MQ=14) taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCAGGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2696846/4‑100 (MQ=18) tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 2:3018724/100‑1 (MQ=255) aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCAGAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:210147/3‑100 (MQ=17) aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGAAAATTCAATATATTGCAGGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:70706/3‑100 (MQ=17) aggCCGGATAAGGCGTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:1418089/3‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTGC‑GAATCC‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAt > 1:2442379/2‑100 (MQ=18) ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCAGAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1631156/2‑100 (MQ=17) ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTGC‑‑AAT‑C‑‑‑TCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1823785/2‑100 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCAGAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:2328186/1‑99 (MQ=18) gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAACATATTGCAATTC‑T‑‑‑CTT‑‑GTAGGTCTGATAAGCGTAGCGCATCAGGctg > 1:563498/1‑98 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCAGGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:3093156/1‑99 (MQ=18) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTGCACCAT‑C‑‑‑CTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 2:592406/1‑99 (MQ=21) gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACCTGCAAATTCAATATATTGCAGGAT‑A‑‑‑CGT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:3472357/1‑99 (MQ=17) ctggataaggcgTTCACGCCGCATCCAGCCT‑‑AC‑AAAATTGTGCAAAATCAATGGATTGCACAGC‑T‑‑‑AGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaga > 1:2728497/9‑98 (MQ=25) ccggataaggcgTTTACGCCTTATCCGGCCT‑‑AC‑AAAACAGTGCAAATTCAATATATTGCAATCT‑T‑‑‑CTG‑‑GTAGGCCTGATAAGCATCGCGCATCAGGCaag > 1:3911787/9‑98 (MQ=18) ccggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTGCAGAGT‑T‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCagt > 1:1746472/9‑98 (MQ=17) ccGGATAAGGCGTTCACGCCGCATCCGGCATGAAC‑AAAAACATGCAAATTCAATAGATTGCAGAGA‑T‑‑‑TAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:201161/1‑100 (MQ=17) cggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATTGTGTAAATTCAATAACTTGATCGAT‑C‑‑‑CAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 2:670402/8‑100 (MQ=21) ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAATGTGCAAATTCAATAAATTGC‑‑AAT‑TCAACTT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 2:3871751/7‑97 (MQ=21) ggataaggcgTTCACGCCGCATCCTGCCT‑‑AC‑AAAAGCACGCAAATTCAATATATTGCAGAGA‑T‑‑‑GGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttt > 1:2198275/7‑100 (MQ=14) ggataaggcgTTCACGCCGCATCCTGCCT‑‑AC‑AAAAGCACGCAAATTCAATATATTGCAGAGA‑T‑‑‑GGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttt > 1:2191830/7‑100 (MQ=14) ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCAGGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:1516479/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTGCAGGAC‑C‑‑‑AT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:3946351/7‑100 (MQ=18) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTGCAGTTT‑A‑‑‑TTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 1:3203297/7‑96 (MQ=21) ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGAAAATTCAATATATTGCAGGAG‑C‑‑‑TGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:212303/7‑100 (MQ=18) gataaggcgTTTACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTGCAGAAA‑C‑‑‑CTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 2:1845336/6‑100 (MQ=18) gataaggcgTTAACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttttt > 2:2615176/6‑100 (MQ=18) aTGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:3804108/100‑1 (MQ=255) taaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCGTGCAAATTCAATACATTGCATGGG‑C‑‑‑CAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattttac > 2:1429123/4‑98 (MQ=18) tGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAACTCGTGTAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 2:2668498/100‑1 (MQ=255) tGCGGCGTTAACGCCTTATCCGGCCT‑‑AA‑AAAATCGGGCAAAGTCAATACATTGCAGCAT‑C‑‑‑GTC‑‑GTAGGCCTGATAAGCGGCCCGCAGCAGGCATTcttgc > 2:3577533/1‑100 (MQ=17) cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttttttct > 2:1180819/1‑96 (MQ=255) ggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt > 2:1973394/1‑100 (MQ=255) gcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgccttt > 2:2926462/1‑100 (MQ=255) gTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:905809/100‑1 (MQ=255) tAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 1:1116322/100‑1 (MQ=255) | GAAGTATTGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTGCAGAAT‑T‑‑‑TTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAT > NC_000913/3705879‑3706077 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |