Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 314,255 T→C 15.5% intergenic (‑450/‑102) ykgP ← / → eaeH pseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913314,2550TC15.5% 490.2 / 75.4 208intergenic (‑450/‑102)ykgP/eaeHpseudogene, oxidoreductase family/pseudogene, attaching and effacing protein homology;factor; Not classified
Reads supporting (aligned to +/- strand):  ref base T (87/87);  new base C (19/13);  total (108/100)
Fisher's exact test for biased strand distribution p-value = 3.44e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.32e-01

Only 100 of 215 total aligned reads displayed.

TAAAAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCT  >  NC_000913/314156‑314354
                                                                                                   |                                                                                                   
taaaAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCt                                                                                                     <  1:1573812/100‑1 (MQ=255)
taaaAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCt                                                                                                     >  1:2079409/1‑100 (MQ=255)
taaaAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCt                                                                                                     >  1:2023114/1‑100 (MQ=255)
 aaaaaTATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTg                                                                                                    >  1:965238/1‑100 (MQ=255)
  aaaaTATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTg                                                                                                    >  1:3325904/1‑99 (MQ=255)
  aaaaTATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGc                                                                                                   <  1:2281736/100‑1 (MQ=255)
  aaaaTATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGc                                                                                                   >  2:1585172/1‑100 (MQ=255)
   aaaTATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCg                                                                                                  >  1:567803/1‑100 (MQ=255)
      tataATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGaa                                                                                               >  1:3096011/1‑100 (MQ=255)
         aaTCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAg                                                                                            <  2:3496882/100‑1 (MQ=255)
          aTCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAgg                                                                                           <  1:1247930/100‑1 (MQ=255)
          aTCCCGCGCCCAACCACCTGATGAGTAGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAgg                                                                                           >  1:2404823/1‑100 (MQ=255)
           tCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGagatcgg                                                                                          >  1:1649681/1‑94 (MQ=255)
            cccGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGan                                                                                         <  2:2141741/100‑2 (MQ=255)
            cccGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGaa                                                                                         >  2:781618/1‑100 (MQ=255)
            cccGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGaa                                                                                         >  2:2896572/1‑100 (MQ=255)
            cccGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGaa                                                                                         >  2:3010924/1‑100 (MQ=255)
             ccGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGaaa                                                                                        >  2:3940572/1‑100 (MQ=255)
             ccGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGaaa                                                                                        >  2:3170230/1‑100 (MQ=255)
             ccGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAGGaaa                                                                                        <  1:1081561/100‑1 (MQ=255)
              cgcgCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAGGAAAt                                                                                       <  1:2719559/100‑1 (MQ=255)
              cgcgCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAGGAAAt                                                                                       <  2:3880268/100‑1 (MQ=255)
                cgcCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCg                                                                                     <  1:1399037/100‑1 (MQ=255)
                cgcCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAGGAAAtac                                                                                     <  1:3167476/100‑3 (MQ=255)
                   ccAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCCGCAGAAAAGGAAAtacctt                                                                                  <  1:1606121/100‑6 (MQ=38)
                        caccTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATcc                                                                             >  1:1228213/1‑100 (MQ=255)
                          ccTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGCAAATcccc                                                                           >  2:1652166/1‑100 (MQ=255)
                           cTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAACAGGAAATCGGGAAATCCCCg                                                                          >  2:2478435/1‑100 (MQ=255)
                            tgatgaGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATcccc                                                                           >  2:1792345/1‑98 (MQ=255)
                            tgatgaGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCgg                                                                         <  1:906350/100‑1 (MQ=255)
                            tgatgaGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCg                                                                          >  2:3408867/1‑99 (MQ=255)
                             gatgaGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGt                                                                        >  2:3760924/1‑100 (MQ=255)
                             gatgaGTGGCTATAGGCACTGGAGATATTAGGTGGCGGTGCACTTTATTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGt                                                                        <  2:3463408/100‑1 (MQ=255)
                                gaGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACCTAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGtt                                                                       >  1:2423909/1‑98 (MQ=255)
                                gaGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGtttt                                                                     <  1:820636/100‑1 (MQ=255)
                                 aGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGttttt                                                                    >  1:3363271/1‑100 (MQ=255)
                                    ggCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTg                                                                 <  2:895603/100‑1 (MQ=255)
                                    ggCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTg                                                                 <  1:1162066/100‑1 (MQ=255)
                                     gCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCTCCGGTTTTTCTGa                                                                >  2:1509059/1‑100 (MQ=255)
                                      cTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGAc                                                               >  2:2670450/1‑100 (MQ=255)
                                       tataGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACa                                                              <  2:1691457/100‑1 (MQ=255)
                                       tataGGCACTGGATATATTAGGTGGCGATGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCAGAAAAGGAAATCGGGAAATCCACGGTTTTTCTGACa                                                              >  2:651500/1‑100 (MQ=255)
                                         taGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAg                                                            >  1:3776758/1‑100 (MQ=255)
                                            gCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGtttttttttttt                                                             >  2:823583/1‑89 (MQ=255)
                                             cACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAg                                                         >  2:1543946/1‑99 (MQ=255)
                                               cTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACg                                                      >  1:469145/1‑100 (MQ=255)
                                               cTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACg                                                      >  2:3306187/1‑100 (MQ=255)
                                                tGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGc                                                     <  1:3269614/100‑1 (MQ=255)
                                                 ggATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGcc                                                    >  1:1261561/1‑100 (MQ=255)
                                                  gATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGcc                                                    <  1:2930468/99‑1 (MQ=255)
                                                      tatTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATTCCCGGTTTTTCTGACAAGCAGACGCCattat                                               >  2:506518/1‑100 (MQ=255)
                                                      tatTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCattat                                               >  1:2536380/1‑100 (MQ=255)
                                                      tatTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCattat                                               >  2:2237809/1‑100 (MQ=255)
                                                       atTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCattatt                                              >  2:1649430/1‑100 (MQ=255)
                                                        ttAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTAttt                                             <  1:1535384/100‑1 (MQ=255)
                                                        ttAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTAttt                                             >  2:2928069/1‑100 (MQ=255)
                                                        ttAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTAttt                                             <  1:1721166/100‑1 (MQ=255)
                                                          aGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTtgt                                           <  2:3561561/100‑1 (MQ=255)
                                                           ggTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTtgtg                                          >  2:1963686/1‑100 (MQ=255)
                                                           ggTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTtgtg                                          >  2:3719745/1‑100 (MQ=255)
                                                               gCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTg                                      <  1:3608958/100‑1 (MQ=255)
                                                                 ggTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGcc                                    <  1:2822791/100‑1 (MQ=255)
                                                                 ggTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGcc                                    <  1:1357794/100‑1 (MQ=255)
                                                                  gTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTTTGACATGCAGACGCCATTATTTGTGTCTGCCt                                   >  2:2709409/1‑100 (MQ=255)
                                                                   tGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTa                                  <  1:3632201/100‑1 (MQ=255)
                                                                    gCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTAt                                 >  1:2163706/1‑100 (MQ=255)
                                                                    gCAATTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAACGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCCGACGCACTTATTTGTGTCTCCCt                                   >  2:3646723/1‑98 (MQ=255)
                                                                     cACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATg                                <  1:354596/100‑1 (MQ=255)
                                                                       cTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGtt                              >  1:3422481/1‑100 (MQ=255)
                                                                         ttCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCg                            >  1:1957155/1‑100 (MQ=255)
                                                                         ttCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCg                            >  1:3008370/1‑100 (MQ=255)
                                                                            ttACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTa                         >  1:3226431/1‑100 (MQ=255)
                                                                             tACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTaa                        >  1:55728/1‑100 (MQ=255)
                                                                               cATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAAtt                      <  1:1863223/100‑1 (MQ=255)
                                                                                aTAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTc                     <  2:303554/100‑1 (MQ=255)
                                                                                aTAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTc                     <  2:2864503/100‑1 (MQ=255)
                                                                                 tAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCg                    <  2:1132579/100‑1 (MQ=255)
                                                                                 tAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCg                    <  1:1992339/100‑1 (MQ=255)
                                                                                  aaaGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGt                   <  1:422521/100‑1 (MQ=255)
                                                                                   tcccgaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGtt                  >  1:1026412/6‑100 (MQ=38)
                                                                                   aaGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGtt                  >  2:2032499/1‑100 (MQ=255)
                                                                                     ggTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtca                <  2:3795099/100‑1 (MQ=255)
                                                                                     ggTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtca                <  1:712298/100‑1 (MQ=255)
                                                                                      gTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcat               >  1:745596/1‑100 (MQ=255)
                                                                                      cgaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcat               >  1:2225947/3‑100 (MQ=255)
                                                                                      cgaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcat               >  1:2846562/3‑100 (MQ=255)
                                                                                       gaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatc              >  2:1171635/2‑100 (MQ=255)
                                                                                       gaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatc              >  1:1135217/2‑100 (MQ=255)
                                                                                       gaTTTCCTTTTCCGCAGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatc              >  1:284888/2‑100 (MQ=255)
                                                                                        aTTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatca             <  2:2009897/100‑1 (MQ=255)
                                                                                        aTTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatca             <  1:1781967/100‑1 (MQ=255)
                                                                                        aTTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTtcatca             <  2:533780/100‑1 (MQ=255)
                                                                                         tttCCTTGTCTGCGGAAAAGGAAATCATGAAATCCCCGGTTTTTCTCACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAg            <  2:2394807/100‑1 (MQ=255)
                                                                                          ttCCTTTTCCGCAGAAAAGGAAATCGGGAAATCTCCGGTTTTTCTGACATGCGGACGGCATAATTTGCTTCGGCCTATGTTCGTTAATTCGGTAATCAgg           >  2:1017021/1‑100 (MQ=255)
                                                                                           tCCTTTTCCGCAGAAAAAGAAATCGGGAAATCCCCGCTTTTTCTGACAAGCAGACGCCACTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAgca          >  2:1493175/1‑98 (MQ=255)
                                                                                                ttCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTa     <  1:3127140/100‑1 (MQ=255)
                                                                                                ttCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTa     <  1:2483803/100‑1 (MQ=255)
                                                                                                 tCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTAt    >  1:3519608/1‑100 (MQ=255)
                                                                                                  cTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTAtc   <  1:3832534/100‑1 (MQ=255)
                                                                                                   tGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTAtct  >  2:1352902/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
TAAAAATATAATCCCGCGCCCAACCACCTGATGAGTGGCTATAGGCACTGGATATATTAGGTGGCGGTGCACTTTCTTACATAAAGGTATTTCCTTTTCTGCGGAAAAGGAAATCGGGAAATCCCCGGTTTTTCTGACAAGCAGACGCCATTATTTGTGTCTGCCTATGTTCGTTAATTCGTTCATCAGGAAATTATCT  >  NC_000913/314156‑314354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: