Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 443,023 T→C 15.7% intergenic (+26/+28) thiI → / ← yajL tRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913443,0230TC15.7% 432.8 / 66.5 193intergenic (+26/+28)thiI/yajLtRNA s(4)U8 sulfurtransferase/oxidative‑stress‑resistance chaperone
Reads supporting (aligned to +/- strand):  ref base T (71/89);  new base C (17/13);  total (90/103)
Fisher's exact test for biased strand distribution p-value = 2.36e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.64e-01

Only 100 of 197 total aligned reads displayed.

GGGTGATGAGCCGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCTTTTTCACGCCC  >  NC_000913/442924‑443122
                                                                                                   |                                                                                                   
gggTGATGAGCCGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGt                                                                                                     <  1:1870058/100‑1 (MQ=255)
    gatgaGCCGTCTGCAGGCCCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGa                                                                                                 <  2:2457798/100‑1 (MQ=255)
      tgaGCCGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATg                                                                                               >  1:1241756/1‑100 (MQ=255)
       gaGCCGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGc                                                                                              <  2:1002072/100‑1 (MQ=255)
        aGCCGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGttattcgtg                                                                                             >  1:2101513/1‑92 (MQ=255)
         gCCGTCTGCAGGCGCTCTATCTGCGCGTGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGa                                                                                            >  1:1460042/1‑100 (MQ=255)
         gCCGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTACTTTGTGGTTTTTACGTCGCATCTGGCCAGATGCg                                                                                             >  2:1732227/1‑99 (MQ=255)
         gCCGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATg                                                                                               >  2:3425281/1‑97 (MQ=255)
         gCCGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGa                                                                                            >  2:3128834/1‑100 (MQ=255)
         gCCGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGa                                                                                            <  2:1273080/100‑1 (MQ=255)
          ccGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGAc                                                                                           <  2:3555112/100‑1 (MQ=255)
          ccGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGAc                                                                                           <  2:1797818/100‑1 (MQ=255)
           cGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACg                                                                                          <  1:2944016/100‑1 (MQ=255)
           cGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACg                                                                                          <  2:1858202/100‑1 (MQ=255)
             tgcgCATGCGCTCGATCTGCGCGGTCAGGGTTTTGACAATGTCGAGGTATCTCGCCGGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGTGAc                                                                                           <  2:2872712/94‑1 (MQ=255)
              cTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGttt                                                                                       <  2:7205/100‑1 (MQ=255)
                gCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGc                                                                                     >  1:775273/1‑100 (MQ=255)
                gCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGc                                                                                     >  1:3551323/1‑100 (MQ=255)
                 cAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGcc                                                                                    >  2:283153/1‑100 (MQ=255)
                   ggCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGc                                                                                  >  2:2238617/1‑100 (MQ=255)
                   ggCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGtaaaaacc                                                                                  <  1:530738/100‑8 (MQ=38)
                   ggCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGGATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGACCAGATGCGACGtaaaaac                                                                                   <  1:2370597/99‑7 (MQ=37)
                      gcTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATc                                                                               >  2:3700478/1‑100 (MQ=255)
                       ctctATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATcc                                                                              >  2:1023442/1‑100 (MQ=255)
                       ctctATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATcc                                                                              >  2:1233472/1‑100 (MQ=255)
                       ctctATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATATGGTCAGATGCGACGTTTGCCGCATcc                                                                              >  2:279379/1‑100 (MQ=255)
                         ctATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCATATGCGACGTTTGCCGCATCCGa                                                                            <  2:1772459/100‑1 (MQ=255)
                           aTCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAAGTTGTGGGTTTTACGTCGAATCTGGTAAGGTGCGAGGTTTGCCGCAGCCGac                                                                           >  2:2496814/1‑99 (MQ=255)
                            tCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGacac                                                                         <  2:3391666/100‑1 (MQ=255)
                             cTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACact                                                                        >  1:3561175/1‑100 (MQ=255)
                             cTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACact                                                                        <  1:1009994/100‑1 (MQ=255)
                             cTGCGCGAGCAGGGCTTTAACAATGGGAAGGTATATCGCCCGTAAGTGGTGGTTGTTACGTCGCATCTGGTCAGATGCGACGTTGGCCGCATCCGACact                                                                        >  1:735278/1‑100 (MQ=255)
                              tGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGac                                                                           <  2:3758668/96‑1 (MQ=255)
                               gcgcGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACactac                                                                      >  1:2435872/1‑100 (MQ=255)
                                ngcgAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACactact                                                                     >  1:28/2‑100 (MQ=255)
                                 gcgAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTc                                                                    >  2:352796/1‑100 (MQ=255)
                                   gAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGt                                                                  <  1:3189708/100‑1 (MQ=255)
                                    aGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAAATTGTGGTTATTACGTCGCATCTGGACAGATGCGACGGTTGCCGCATCCGACACTACTCGta                                                                 >  2:76691/1‑100 (MQ=255)
                                         ggCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTaataat                                                            <  2:1918773/100‑1 (MQ=255)
                                         ggCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTaataat                                                            <  1:1759413/100‑1 (MQ=255)
                                            tttAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATtat                                                         <  2:531713/100‑1 (MQ=255)
                                              tAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATaa                                                       >  1:306101/1‑100 (MQ=255)
                                              tAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATaa                                                       >  2:1428389/1‑100 (MQ=255)
                                              tAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATaa                                                       >  2:2659856/1‑100 (MQ=255)
                                                aCAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAAt                                                     >  1:1818167/1‑100 (MQ=255)
                                                    tgtgAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCt                                                 >  2:1563512/1‑100 (MQ=255)
                                                      tgAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTgc                                               <  1:1045939/100‑1 (MQ=255)
                                                      tgAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTgc                                               <  1:1986062/100‑1 (MQ=255)
                                                       gAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTgcc                                              <  1:944437/100‑1 (MQ=255)
                                                       gAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTgcc                                              <  1:3372052/100‑1 (MQ=255)
                                                       gAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTgcc                                              <  2:824235/100‑1 (MQ=255)
                                                             atatCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATc                                        >  2:929634/1‑100 (MQ=255)
                                                               atCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCAc                                      >  2:2718366/1‑100 (MQ=255)
                                                               atCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCAc                                      >  1:2214686/1‑100 (MQ=255)
                                                                tCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGTTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCAcc                                     <  1:1518112/100‑1 (MQ=255)
                                                                tCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCAcc                                     <  1:3657405/100‑1 (MQ=255)
                                                                tCGCCCGTAATTTGTCGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCAcc                                     <  1:3887208/100‑1 (MQ=255)
                                                                 cGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCa                                    >  1:2989345/1‑100 (MQ=255)
                                                                  gCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAg                                   >  2:2065462/1‑100 (MQ=255)
                                                                  gCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAg                                   <  1:64731/100‑1 (MQ=255)
                                                                   cccGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGt                                  >  1:921402/1‑100 (MQ=255)
                                                                      gTAATTTGTGGTTTTTACGTCGCATCTGGACAGATGCGACGTTTGCCGCATCCGACACTACTCGTATTAATTATAAATCCCTGCCGCCATCACCAGTtgt                               <  2:2366178/100‑1 (MQ=255)
                                                                       tAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTtgtg                              <  1:1169837/100‑1 (MQ=255)
                                                                           ttGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACAACTGGTGATgg                          <  1:378011/100‑2 (MQ=255)
                                                                            tgtgGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGcc                         >  1:2628195/1‑100 (MQ=255)
                                                                            tgtgGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGcc                         <  2:368823/100‑1 (MQ=255)
                                                                              tgGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCAc                       <  2:2844466/100‑1 (MQ=255)
                                                                               ggTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACt                      <  1:1377302/100‑1 (MQ=255)
                                                                                gTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACAACTGGTGATggcggca                     <  2:1299305/100‑7 (MQ=255)
                                                                                 tttttACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTc                    >  2:1517243/1‑100 (MQ=255)
                                                                                 tttttACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTc                    >  1:1130/1‑100 (MQ=255)
                                                                                     tACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATgg                <  1:1023448/100‑1 (MQ=255)
                                                                                     tACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATgg                <  1:1910941/100‑1 (MQ=255)
                                                                                      aCGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATggg               <  1:835140/100‑1 (MQ=255)
                                                                                      aCGTCGCATCTGGTCACATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATggg               <  2:2313698/100‑1 (MQ=255)
                                                                                      aCGTCGCATCTGACCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATggg               >  1:2328519/1‑100 (MQ=255)
                                                                                      aCGTCGCATCTGACCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCATGCCGCCATCACCAGTTGTGATGCAACTTCATggg               >  2:2601403/1‑100 (MQ=39)
                                                                                       cGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGc              <  2:2645155/100‑1 (MQ=255)
                                                                                       cGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGc              >  1:2838301/1‑100 (MQ=255)
                                                                                       cGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGc              >  1:3280243/1‑100 (MQ=255)
                                                                                       cGTCGCATCTGACCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGc              >  1:2741575/1‑100 (MQ=255)
                                                                                       cGTCGCATCTGACCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGc              >  2:1169794/1‑100 (MQ=255)
                                                                                       cGTCGCATCTGACCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGc              >  2:3268566/1‑100 (MQ=255)
                                                                                       cGTCGCATCTGACCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCAACTTCATGGGc              >  2:160979/1‑100 (MQ=255)
                                                                                        gTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCt             >  2:2083442/1‑100 (MQ=255)
                                                                                        gTCGCATCTGACCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCt             <  2:2328507/100‑1 (MQ=255)
                                                                                        gTCGCATCTGACCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCt             >  1:3153210/1‑100 (MQ=255)
                                                                                        gTCGCATCTGACCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCt             >  1:250839/1‑100 (MQ=255)
                                                                                        gTCGCATCTGACCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTAATGCCCCTTCacg                 >  2:470138/1‑94 (MQ=255)
                                                                                         tCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTTATGCCACTTCATGGGCtt            >  1:923711/1‑100 (MQ=255)
                                                                                          cGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCttt           >  2:2192792/1‑100 (MQ=255)
                                                                                           gCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCtttt          <  2:2001705/100‑1 (MQ=255)
                                                                                             aTCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCTTTTTc        <  2:131839/100‑1 (MQ=255)
                                                                                                tGGTCCGATGCGCCGTTTGCCGCATCCGACACTACTCGTAATAATTATCAATCCCTGCCGCCATCACCCGTTCTTATGCCACTTCATGGGCTTTTTc        >  2:659534/1‑97 (MQ=255)
                                                                                                tGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCTTTTTCACg     >  1:397914/1‑100 (MQ=255)
                                                                                                tGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCTTTTTCACg     <  1:3831292/100‑1 (MQ=255)
                                                                                                 ggTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCTTTTTCACGc    <  1:3700506/100‑1 (MQ=255)
                                                                                                  gTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCTTTTTCACGcc   <  1:3916099/100‑1 (MQ=255)
                                                                                                  gTCACATGGGACGTTTGTCCCATCCGATACTCCTCGTAATAGTTGTTAATCCCGGCCGCCGTCACCAGTTGTGATTCCACTTCCTGGGCTTTTTCACGcc   <  2:1189144/100‑1 (MQ=255)
                                                                                                   tCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCTTTTTCACGccc  <  2:1894786/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGGTGATGAGCCGTCTGCAGGCGCTCTATCTGCGCGAGCAGGGCTTTAACAATGTGAAGGTATATCGCCCGTAATTTGTGGTTTTTACGTCGCATCTGGTCAGATGCGACGTTTGCCGCATCCGACACTACTCGTAATAATTATAAATCCCTGCCGCCATCACCAGTTGTGATGCCACTTCATGGGCTTTTTCACGCCC  >  NC_000913/442924‑443122

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: