New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1068354 =	NA (NA)	4 (0.080) +CTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTT	4/120	7.5	NA	noncoding (1/98 nt)	RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	4063560 =	NA (NA)					noncoding (42/75 nt)	REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP296 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.

CTTCTGGTAGGCCTGATAAGCATCGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1068388‑1068354 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCA  >  NC_000913/4063560‑4063594                                    |||||||||||||||||||||||||||||||||||||||                                    CTTCTGGTAGGCCTGATAAGCATCGCGCATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCG           <  2:1166931/100‑1   TCTGGTAGGCCTGATAAGCATCGCGCATCAGGCCTACCAGAAGATCGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGag         >  1:1166936/1‑98      GGTAGGCCTGATAAGCATCGCGCATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCC      >  2:135070/1‑100          GGCCTGATAAGCATCGCGCATCAGGCCTACCAGAAGATTGCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCA  >  1:1728958/1‑100                                    |||||||||||||||||||||||||||||||||||||||                                    CTTCTGGTAGGCCTGATAAGCATCGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1068388‑1068354 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCA  >  NC_000913/4063560‑4063594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.