| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3079614 | 114 (1.450) | 13 (0.190) | 9/176 | 7.4 | 11.4% | intergenic (‑284/+30) | cmtB/tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding |
| ? | NC_000913 | = 3079618 | 101 (1.450) | intergenic (‑288/+26) | cmtB/tktA | putative mannitol‑specific enzyme IIA component of PTS/transketolase 1, thiamine triphosphate‑binding | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3079506‑3079614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaggtcgcTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAATAAATATCAA < NC_000913/3079618‑3079520 TGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAA < 1:185211/100‑1TGCATATTACATAATTGATATTTATTGCATATAAATATTTGAGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAA > 2:1107704/1‑100 GCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATTAAGGTAATAAAA > 1:1025907/1‑100 GCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAA > 1:1826618/1‑100 ATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAA < 1:1520905/100‑1 TATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAG < 2:1491585/100‑1 ATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCTGCAAACGGACATATCAAGGTAATAAAAAAGG > 2:169074/1‑100 TTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCTGCAAACGGACATATCAAGGTAATAAAAAAGGT > 2:716863/1‑100 ACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCG > 1:958437/1‑100 CATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGC > 1:1435108/1‑100 TTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCTTCGGCGACCTTTTT < 2:229536/100‑1 TTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCTTCGGCGACCTTTTT < 1:920275/100‑1 TTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCTTCGGCGACCTTTTT < 1:726794/100‑1 TTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCTTCGGCGACCTTTTT < 1:725732/100‑1 ctCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCTTCGGCGACCTTTTTT < 1:483275/98‑1 CATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCTTCGGCGACCTTTTTTAg > 2:483276/1‑99 TAAATATTTGTGATCTAGAACACGTCTTTTCTATTGCTTGGCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCTTCGGCGACCTTTTTTA < 1:370265/95‑1 TAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAATGTAAGAAAAAAGGTCGCTTCGTCGACCTTTTTTAagatc > 2:370266/1‑95 ACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTG > 2:352402/1‑100 AACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCG < 1:352401/100‑1 ACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGG < 1:681329/100‑1 gatcTAAAAAAGGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTAT < 2:680164/96‑1 tctAAAAGGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGC < 1:1998585/97‑1 tctAAAAGGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGC < 1:1690260/97‑1 AAAAAAGGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATAgatc > 1:680164/1‑96 AAAAGGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAga > 2:1690248/1‑98 AAAAGGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAga > 2:1998574/1‑98 AAAAGGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAAT > 1:1558920/1‑100 AAAGGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAATA < 2:1117964/100‑1 GGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAATAAAT < 1:648480/100‑1 GGTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAATAAAT < 1:1843801/100‑1 GTCGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAATAAATA < 1:1353119/100‑1 CGCTTCGGCGACCTTTTTTATTACCTTGATATGTCCATTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAATAAATATC > 1:1419308/1‑100 GCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAATAAATATCA > 2:408460/1‑100 GCTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAATAAATATCA > 2:958435/1‑100 CTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAATAAATATCAA > 1:1455583/1‑100 TGCATATTACATAATTGATATTTATTGCATATAAATATTTGTGATCTACAACACGCCTTATCTATTGCTTGTCCGCAAACGGACATATCAAGGTAATAAAAAAGGTCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3079506‑3079614‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaggtcgcTTCGGCGACCTTTTTTATTACCTTGATATGTCCGTTTGCGGACAAGCAATAGATAAGGCGTGTTGTAGATCACAAATATTTATATGCAATAAATATCAA < NC_000913/3079618‑3079520 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |