New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 746167	106 (0.820)	18 (0.150)	9/162	NT	15.3%	coding (233/792 nt)	nei	endonuclease VIII and 5‑formyluracil/5‑hydroxymethyluracil DNA glycosylase
	?	NC_000913	= 746189	103 (0.880)					coding (255/792 nt)	nei	endonuclease VIII and 5‑formyluracil/5‑hydroxymethyluracil DNA glycosylase

CACGTTACCCATGTGGAAACGCGTGGTAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/746064‑746167 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtggtCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGACGCCGTAAAGCTGATTATGGCTGTAGAGCGTTAAGTCGTTGGAAAAATGAGTTAACAACGCCTT  <  NC_000913/746189‑746091                                                                                                                                                                                                             CACGTTACCCATGTGGAAACGCGTGGTAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCG                                                                                                         <  2:2736903/100‑1  ACGTTACCCATGTGGAAACGCGTGGTAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGT                                                                                                        >  1:197398/1‑100  ACGTTACCCATGTGGAAACGCGTGGTAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGT                                                                                                        <  1:2912460/100‑1  ACGTTACCCATGTGGAAACGCGTGGTAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCG                                                                                                           <  2:3279895/97‑1   CGTTACCCATGTGAAAACGCGTGGTAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTG                                                                                                       >  1:2470787/1‑100    GTTACCCATGTGGAAACGCGTGGTAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGG                                                                                                      <  1:2159346/100‑1    GTTACCCATGTGGAAACGCGTGGTAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGG                                                                                                      >  2:234755/1‑100      TACCCATGTGGAAACGCGTGGTAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGT                                                                                                     <  1:3046620/99‑1                          GTAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATC                                                                                >  1:1669975/1‑100                           TAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCA                                                                               <  2:3529561/100‑1                           TAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCA                                                                               <  2:3129146/100‑1                                  TTGTTAACTCATTTTTCCATCGACTTAACGCTTTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACG                                                                         <  2:2305260/99‑1                                  TTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGC                                                                        <  1:2777429/100‑1                                  TTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGC                                                                        <  2:1043091/100‑1                                    GTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGC                                                                      <  2:1669967/100‑1                                    GTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGC                                                                      <  2:1323199/100‑1                                    GTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGC                                                                      <  1:2888295/100‑1                                    GTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGC                                                                      <  1:1412240/100‑1                                     TTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCCGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCC                                                                     <  2:1017516/100‑1                                     TTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCC                                                                     <  1:716271/100‑1                                     TTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCC                                                                     <  1:3124587/100‑1                                     TTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTGACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCC                                                                     <  2:2487662/100‑1                                      TAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCCA                                                                    <  2:2521812/100‑1                                        ACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGA                                                                  <  1:2954899/100‑1                                         CTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGAC                                                                 <  2:553279/100‑1                                         CTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGAC                                                                 <  1:386047/100‑1                                                                                                  GCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGACGCCGTGAAGCTGATTATGGCTGTAGAGCGTTAAATCGTTGGAAAAAGCAGTTAACA         >  2:2310568/1‑99                                                                                                  GCGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGACGCCGTAAAGCTGATTATGGCTGTAGAGCGTTAAGTCGTTGGAAAAATGAGTTAACAA        >  2:3244717/1‑100                                                                                                   CGTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGACGCCGTAAAGCTGATTATGGCTGTAGAGCGTTAAGTCGTTGGAAAAATGAGTTAACAAC       >  1:1511004/1‑100                                                                                                   CGTAGTCTGCGTCTCTTCGCCGGTATCAACCACGCGCCAGACGCCGTAAATCTGATTATGGCTGTAGAGCGTTAAGTCGTTGGAAAAATGAGTTAACAAC       <  2:1255318/100‑1                                                                                                    GTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGACGCCGTAAAGCTGATTATGGCTGTAGAGCGTTAAGTCGTTGGAAAAATGAGTTAACAACG      <  2:14358/100‑1                                                                                                    GTGGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGACGCCGTAAAGCTGATTATGGCTGTAGAGCGTTAAGTCGTTGGAAAAATGAGTTAACAACG      <  1:2242852/100‑1                                                                                                      GGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGGCGCCGTAAAGCTGATTATGGCTGTAGAGCGTTAAGTCGTTGGAAAAATGAGTTAACAACGCC    <  1:3329737/100‑1                                                                                                      GGTCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGCCGCCGTAAAGCTGATTATGGCTGTAGAGCGTTAAGTCGTTGGAAAAATGAGTTAACAACGCC    <  1:869914/100‑1                                                                                                        TCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGACGCCGTAAAGCTGATTATGGCTGTAGAGCGTTAAGTCGTTGGAAAAATGAGTTAACAACGCCTT  <  1:1596561/100‑1                                                                                                        TCTGCGGCGCTTCGCCGGTATCAACCACGCGGCAGACGCCGTAAAGCTGATTATGGCTGTAGAGCGTTAAGTCGTTGGAAAAATGAGTTAACAACGCCT   <  2:1525701/99‑1                                                                                                                                                                                                             CACGTTACCCATGTGGAAACGCGTGGTAAGGCGTTGTTAACTCATTTTTCCAACGACTTAACGCTCTACAGCCATAATCAGCTTTACGGCGTCTGGCGCGTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/746064‑746167 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgtggtCTGCGGCTCTTCGCCGGTATCAACCACGCGCCAGACGCCGTAAAGCTGATTATGGCTGTAGAGCGTTAAGTCGTTGGAAAAATGAGTTAACAACGCCTT  <  NC_000913/746189‑746091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.